RetrogeneDB ID: | retro_ggor_2434 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:65480422..65481544(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000026362 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ADH5 | ||
Ensembl ID: | ENSGGOG00000028244 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MANQVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGA |
MANQV.KCKAAVAWEAGKPLSIE.IEVAPPKAHEVRIKIIATAVCHTDAYT...ADPEGCFPVILGHEGA | |
Retrocopy | MANQVMKCKAAVAWEAGKPLSIEDIEVAPPKAHEVRIKIIATAVCHTDAYTMRVADPEGCFPVILGHEGA |
Parental | GIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHY |
GI.ESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHY | |
Retrocopy | GIEESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHY |
Parental | MGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKVEPGSVCAVFGLGGVGLAVTMG |
.GTSTFSEYTVVADISVAKIDPLAPLDK.CLLGCGIS.G.GAAVNTAKVEPGSVCAVFGLGGVGLAV.MG | |
Retrocopy | TGTSTFSEYTVVADISVAKIDPLAPLDKLCLLGCGISAGDGAAVNTAKVEPGSVCAVFGLGGVGLAVIMG |
Parental | CKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALE |
CKVAGASRIIGVDINKDKFARAKEFGATECINPQ.FSKPIQE.L.EMTDGGVDYSFECIGNVKVMRAALE | |
Retrocopy | CKVAGASRIIGVDINKDKFARAKEFGATECINPQGFSKPIQEGLTEMTDGGVDYSFECIGNVKVMRAALE |
Parental | ACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNL |
A.HKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVES.PKLVSE.MSKKIKVDEFVTHNL | |
Retrocopy | AYHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESIPKLVSECMSKKIKVDEFVTHNL |
Parental | SFDEINKAFELMHSGKSIRTVVKI |
SFDEINKAF.LMHSGK.IRTVVKI | |
Retrocopy | SFDEINKAFQLMHSGKNIRTVVKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .14 RPM | 58 .07 RPM |
SRP007412_cerebellum | 0 .04 RPM | 35 .42 RPM |
SRP007412_heart | 0 .00 RPM | 29 .93 RPM |
SRP007412_kidney | 0 .08 RPM | 167 .24 RPM |
SRP007412_liver | 0 .21 RPM | 158 .72 RPM |
SRP007412_testis | 0 .21 RPM | 78 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3607 |
Pan troglodytes | retro_ptro_2438 |
Pongo abelii | retro_pabe_176 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013007 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007198 | 2 retrocopies | |
Homo sapiens | ENSG00000197894 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000028244 | 2 retrocopies |
retro_ggor_2434 , retro_ggor_354,
|
Myotis lucifugus | ENSMLUG00000002722 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003552 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000009642 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013946 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000014946 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000016303 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000009185 | 1 retrocopy | |
Xenopus tropicalis | ENSXETG00000009304 | 1 retrocopy |