RetrogeneDB ID: | retro_hsap_330 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:240333469..240334591(+) | ||
Located in intron of: | ENSG00000155816 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000223694 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ADH5 | ||
Ensembl ID: | ENSG00000197894 | ||
Aliases: | ADH5, ADH-3, ADHX, FALDH, FDH, GSH-FDH, GSNOR | ||
Description: | alcohol dehydrogenase 5 (class III), chi polypeptide [Source:HGNC Symbol;Acc:253] |
Percent Identity: | 89.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGA |
M.N.VIKCKAAVAWEAGKPLS.EEIEVAP.KA.EV.IKIIATAVCHT.AYTLS.ADPEGCFPVILGHEGA | |
Retrocopy | MVNQVIKCKAAVAWEAGKPLSVEEIEVAPLKAREV*IKIIATAVCHTNAYTLSRADPEGCFPVILGHEGA |
Parental | GIVESVGEGVTKLKAGD-TVIPLYIPQCGECKFCLNPKTNL-CQKIRVTQGKGLMPDGTSRFTCKGKTIL |
GIV.SVGEGV.KLKAGD.TVIP.YIPQCGECKFCLNPKTNL.CQ.IRVTQGKGL.PDGTSRFTCKGKTIL | |
Retrocopy | GIVGSVGEGVAKLKAGD>TVIPFYIPQCGECKFCLNPKTNL<CQNIRVTQGKGLVPDGTSRFTCKGKTIL |
Parental | HYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVI |
HYMGTSTFSE.TVVADISVAKID.LAPLDKVCLLGCGIS.GYGAAVNT.K..PGSV.AVFGLGGVGL.VI | |
Retrocopy | HYMGTSTFSECTVVADISVAKIDSLAPLDKVCLLGCGISAGYGAAVNTVKVGPGSVWAVFGLGGVGLTVI |
Parental | MGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAA |
.G.KVAGASRIIGVDI..DKF.RAKEFGATEC.N.QDFS.PIQEVLIE.TDGGVDYSFECI.NVKV.RAA | |
Retrocopy | VGGKVAGASRIIGVDIHQDKFPRAKEFGATECMNRQDFSQPIQEVLIERTDGGVDYSFECIRNVKVVRAA |
Parental | LEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTH |
LEAC..GWGVSVVVGVAASG.EIAT.PFQLVTGRTWKGTAFGG.KSVESVPKLVSEY.SKKIKVDEFVTH | |
Retrocopy | LEACQQGWGVSVVVGVAASGQEIATHPFQLVTGRTWKGTAFGG*KSVESVPKLVSEYVSKKIKVDEFVTH |
Parental | NLSFDEINKAFELMHSGKSIRTVVKI |
NLSFDEINKAFEL.HSGKSIRTVVKI | |
Retrocopy | NLSFDEINKAFELLHSGKSIRTVVKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 131 .99 RPM |
bodymap2_adrenal | 0 .00 RPM | 120 .26 RPM |
bodymap2_brain | 0 .19 RPM | 83 .77 RPM |
bodymap2_breast | 0 .00 RPM | 163 .62 RPM |
bodymap2_colon | 0 .00 RPM | 203 .20 RPM |
bodymap2_heart | 0 .00 RPM | 114 .35 RPM |
bodymap2_kidney | 0 .00 RPM | 141 .74 RPM |
bodymap2_liver | 0 .00 RPM | 125 .92 RPM |
bodymap2_lung | 0 .00 RPM | 87 .41 RPM |
bodymap2_lymph_node | 0 .00 RPM | 87 .42 RPM |
bodymap2_ovary | 0 .00 RPM | 184 .77 RPM |
bodymap2_prostate | 0 .00 RPM | 291 .74 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 101 .23 RPM |
bodymap2_testis | 0 .04 RPM | 164 .42 RPM |
bodymap2_thyroid | 0 .00 RPM | 153 .04 RPM |
bodymap2_white_blood_cells | 0 .02 RPM | 74 .16 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_91661 | 209 libraries | 137 libraries | 755 libraries | 411 libraries | 317 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_266 |
Gorilla gorilla | retro_ggor_354 |
Pongo abelii | retro_pabe_359 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013007 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007198 | 2 retrocopies | |
Homo sapiens | ENSG00000197894 | 3 retrocopies |
retro_hsap_175, retro_hsap_330 , retro_hsap_3607,
|
Gorilla gorilla | ENSGGOG00000028244 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000002722 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003552 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000009642 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013946 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000014946 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000016303 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000009185 | 1 retrocopy | |
Xenopus tropicalis | ENSXETG00000009304 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |