RetrogeneDB ID: retro_mluc_1702

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429887:741947..742808(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ADH5
• Ensembl ID: ENSMLUG00000002722
• Aliases: None
• Description: None

Sequence

>retro_mluc_1702
GTCAAGTGCAAGGCAGCGGTTGCCTGGGAGGCTGAAAAGCCTCTCTCCATAAAGGAGGTAGAAGTGGCACCCCCAAAGGC
TCATGAAGTTCGAATTAAGATTGTTACCACTGCAGTGTGCCACACTGATGCCTAGACCCTGAGTGGGGCTGATCCTGAAG
GGAGTTTTCCCGTGATCCTGGGACACGAAGGTACTGGAATTGTGGAGAGTGTTGGCGTAGGAGTTACTAAGATGAAAGCA
GGTGATACAGTCATCTCACTTTACAGCCCTCAATATGGAGAATGCAAATTTTGGCTAATTCCTAAAACAAACCTTTGCCA
GAAGTTAAGAGTTACTCAAGGGAAAGGTTTAATGCCAGATGGCACTAGCAGCTTTACTTGCAAAGGAAAGACAATTTACA
TTACATGGGAACCAGCACATTCTCTGAATACACAGTTGTGGCTAATATCTCTGTTGCTAAAATGGATCCTTTAGCACCTT
TGGATAAAGTCTGCCTCCTGGGTTGTGGCATTTTCACTGCCTATGGTGCTGCTGTGAACACTGCCAAGTGGAGCCTGGCT
CTACTTGTGCCGTCTTTGGCCTAGGAGGAGTTGGATCGGTGGTTATCATGGGCTGTAAAGTGGCCGGTGCGTCCCGGATC
ATTGGTGTGGATATCAATAAAGATAAATTTGCAAAGGCCAAAGAGTTTGGAGCCTGCGGATGTATCAGCCCGTAGGACTT
AAGTAAACCCATCCAGGAAGTGCTCATTGAGATGACTGATGGGGGAGAAGATACTCCTTTGCGTGTGTTGGTAATGTGAA
GGTCATGAGAGCTGTGCTGAAGGCCTGCCACAAAGGCTGGGGCCTCAGGTCGCCACTTGGC

Alignment

ORF - retro_mluc_1702 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.91 %
• Parental protein coverage: 77.01 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  IKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPVILGHEGAGIVES
          .KCKAAVAWEA.KPLSI.EVEVAPPKAHEVRIKI..TAVCHTDA.TLSGADPEGSFPVILGHEG.GIVES
Retrocopy VKCKAAVAWEAEKPLSIKEVEVAPPKAHEVRIKIVTTAVCHTDA*TLSGADPEGSFPVILGHEGTGIVES

Parental  VGVGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKKI-LHYMGTS
          VGVGVTK.KAGDTVI.LY.PQ.GECKF.L.PKTNLCQK.RVTQGKGLMPDGTS.FTCKGK.I.LHYMGTS
Retrocopy VGVGVTKMKAGDTVISLYSPQYGECKFWLIPKTNLCQKLRVTQGKGLMPDGTSSFTCKGKTI<LHYMGTS

Parental  TFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAK-VEPGSTCAIFGLGGVGLAVIMGCKV
          TFSEYTVVA.ISVAK.DPLAPLDKVCLLGCGI.T.YGAAVNTAK.VEPGSTCA.FGLGGVG..VIMGCKV
Retrocopy TFSEYTVVANISVAKMDPLAPLDKVCLLGCGIFTAYGAAVNTAK<VEPGSTCAVFGLGGVGSVVIMGCKV

Parental  AGASRIIGVDINKDKFARAKEFGACECISPQDFSKPIQEVLVEMTDGGVD-YSFECIGNVKVMRAALEAC
          AGASRIIGVDINKDKFA.AKEFGAC.CISP.D.SKPIQEVL.EMTDGG.D.YSF.C.GNVKVMRA.L.AC
Retrocopy AGASRIIGVDINKDKFAKAKEFGACGCISP*DLSKPIQEVLIEMTDGGED<YSFACVGNVKVMRAVLKAC

Parental  HKGWGVSVVVG
          HKGWG.....G
Retrocopy HKGWGLRSPLG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1702 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 22 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000013007	1 retrocopy	retro_cfam_14,
Callithrix jacchus	ENSCJAG00000007198	2 retrocopies	retro_cjac_1029, retro_cjac_2933,
Homo sapiens	ENSG00000197894	3 retrocopies	retro_hsap_175, retro_hsap_330, retro_hsap_3607,
Gorilla gorilla	ENSGGOG00000028244	2 retrocopies	retro_ggor_2434, retro_ggor_354,
Myotis lucifugus	ENSMLUG00000002722	1 retrocopy	retro_mluc_1702 ,
Macaca mulatta	ENSMMUG00000003552	1 retrocopy	retro_mmul_299,
Mustela putorius furo	ENSMPUG00000009642	1 retrocopy	retro_mputfur_1625,
Nomascus leucogenys	ENSNLEG00000013946	3 retrocopies	retro_nleu_1772, retro_nleu_2636, retro_nleu_983,
Pongo abelii	ENSPPYG00000014946	3 retrocopies	retro_pabe_176, retro_pabe_359, retro_pabe_453,
Pan troglodytes	ENSPTRG00000016303	3 retrocopies	retro_ptro_166, retro_ptro_2438, retro_ptro_266,
Sus scrofa	ENSSSCG00000009185	1 retrocopy	retro_sscr_659,
Xenopus tropicalis	ENSXETG00000009304	1 retrocopy	retro_xtro_57,