RetrogeneDB ID: | retro_mmul_299 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 18:52833707..52834832(+) | ||
Located in intron of: | ENSMMUG00000010402 | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000014993 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2546 | ||
Ensembl ID: | ENSMMUG00000003552 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.38 % |
Parental protein coverage: | 99.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGAGVV |
QVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGA.PEGCFPVILGHEGAG.V | |
Retrocopy | QVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGAEPEGCFPVILGHEGAGIV |
Parental | ESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGT |
ESVGEGVTKLKAGDTVIPLYIPQCGECKFCLN.KTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGT | |
Retrocopy | ESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNHKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGT |
Parental | STFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKVEPGSVCAVFGLGGVGLAVIMGCKV |
STFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKVEPGSVCAVFGLGGVGLAVIMGCKV | |
Retrocopy | STFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKVEPGSVCAVFGLGGVGLAVIMGCKV |
Parental | AGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACH |
AGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC.GNVKVMRAALEACH | |
Retrocopy | AGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECTGNVKVMRAALEACH |
Parental | KGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFD |
KGWG.SVVVG.AASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFD | |
Retrocopy | KGWGISVVVGIAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFD |
Parental | EINKAFELMHSGKSIRTVVKI |
EINKAFELMHSGKSIRTVVKI | |
Retrocopy | EINKAFELMHSGKSIRTVVKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .45 RPM | 20 .84 RPM |
SRP007412_brain_prefrontal_cortex | 1 .11 RPM | 36 .17 RPM |
SRP007412_cerebellum | 0 .65 RPM | 19 .63 RPM |
SRP007412_heart | 1 .35 RPM | 47 .34 RPM |
SRP007412_kidney | 2 .00 RPM | 67 .60 RPM |
SRP007412_liver | 5 .42 RPM | 132 .65 RPM |
SRP007412_testis | 1 .13 RPM | 16 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013007 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007198 | 2 retrocopies | |
Homo sapiens | ENSG00000197894 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000028244 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000002722 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003552 | 1 retrocopy |
retro_mmul_299 ,
|
Mustela putorius furo | ENSMPUG00000009642 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013946 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000014946 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000016303 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000009185 | 1 retrocopy | |
Xenopus tropicalis | ENSXETG00000009304 | 1 retrocopy |