RetrogeneDB ID: retro_mputfur_1625

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897421.1:23215..23904(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ADH5
• Ensembl ID: ENSMPUG00000009642
• Aliases: None
• Description: alcohol dehydrogenase 5 (class III), chi polypeptide [Source:HGNC Symbol;Acc:253]

Sequence

>retro_mputfur_1625
CCAAAGGCTCATGAAGTTTGAAATAAGATTATTTCCACTGTAGTTTGCCACACTAATTCCTACATTCCGAGTAGAGCAGA
TCCTTGGTGGAAACTCCCAGTGATCTTGGGACATAAAGGTGCTAGAATTGTGGAAACTATTGCTGAAGGAGTTACTAAGT
TGAAAGTAAGTTATATTGTCATCCCACTTTACATTTCACAATGTAGAGAATGCAGATTTTGTCTCAATCCTAAAACAAAT
AGCTCCAGAAGACAAGCGTCATTGAAAAGAAAGGATTAATGTCAAACAGTACTAGCAGATTTACCTGAAAAAGAAATACA
ATTTTGCATTACATGGGAACAAGCATATTTTCTGAATAAAGAGTTGTGGCTGATTCCTCTTTTGCTGGAATTGATCCTTT
AGCACCTTTAGGTAGTCTGCCTTCTAGTTGCATCATTTCAACAGGTTATAGTGCTGTTGTGAACATAGTCAAGGTGGAGC
CTGGCTCTATTTATGCTGTCCTTGGCCTAGGAGGAGTTGGACTAGCAATTATTGTGGGCTAAAAGGTGGTTAGTAGGTCC
CAGAGCATTGGTATGGACTTAAATAATGATAAATTCAAAATGGTCAAGTAGTTTAGGGTCTCTGAATGTATTAATTGCCA
GAACTTTAGGAAAACCATTCAGGAAATGTGCGTTGAGAAGACTCATGGG

Alignment

ORF - retro_mputfur_1625 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.5 %
• Parental protein coverage: 61.76 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPVILGHEGAGIVESVGEGVTKVKAGDTVIPLYIPQCGE
          PKAHEV..KII.T.VCHT..Y..S.ADP....PVILGH.GA.IVE...EGVTK.K....VIPLYI.QC.E
Retrocopy PKAHEV*NKIISTVVCHTNSYIPSRADPWWKLPVILGHKGARIVETIAEGVTKLKVSYIVIPLYISQCRE

Parental  CKFCLNPKTNL-CQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDK
          C.FCLNPKTN...QK..V...KGLM...TSRFT.K..TILHYMGTS.FSE..VVAD.S.A.IDPLAPL..
Retrocopy CRFCLNPKTNS<LQKTSVIEKKGLMSNSTSRFT*KRNTILHYMGTSIFSE*RVVADSSFAGIDPLAPLGS

Parental  VCLLGCGISTGYGAAVNTAKVEPGSTCAVFGLGGVGLAAIMGCKVAGASRIIGVDINKDKFARAKEFGAS
          .....C.ISTGY.A.VN..KVEPGS..AV.GLGGVGLA.I.G.KV...S..IG.D.N.DKF...K.F..S
Retrocopy L-PSSCIISTGYSAVVNIVKVEPGSIYAVLGLGGVGLAIIVG*KVVSRSQSIGMDLNNDKFKMVK*FRVS

Parental  ECINPQDFSKPIQEVLIEMTDG
          ECIN.Q.F.K.IQE...E.T.G
Retrocopy ECINCQNFRKTIQEMCVEKTHG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1625 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1625 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 22 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000013007	1 retrocopy	retro_cfam_14,
Callithrix jacchus	ENSCJAG00000007198	2 retrocopies	retro_cjac_1029, retro_cjac_2933,
Homo sapiens	ENSG00000197894	3 retrocopies	retro_hsap_175, retro_hsap_330, retro_hsap_3607,
Gorilla gorilla	ENSGGOG00000028244	2 retrocopies	retro_ggor_2434, retro_ggor_354,
Myotis lucifugus	ENSMLUG00000002722	1 retrocopy	retro_mluc_1702,
Macaca mulatta	ENSMMUG00000003552	1 retrocopy	retro_mmul_299,
Mustela putorius furo	ENSMPUG00000009642	1 retrocopy	retro_mputfur_1625 ,
Nomascus leucogenys	ENSNLEG00000013946	3 retrocopies	retro_nleu_1772, retro_nleu_2636, retro_nleu_983,
Pongo abelii	ENSPPYG00000014946	3 retrocopies	retro_pabe_176, retro_pabe_359, retro_pabe_453,
Pan troglodytes	ENSPTRG00000016303	3 retrocopies	retro_ptro_166, retro_ptro_2438, retro_ptro_266,
Sus scrofa	ENSSSCG00000009185	1 retrocopy	retro_sscr_659,
Xenopus tropicalis	ENSXETG00000009304	1 retrocopy	retro_xtro_57,