RetrogeneDB ID: | retro_hsap_1454 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:92069347..92069777(-) | ||
Located in intron of: | ENSG00000133962 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000268295 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POLR3G | ||
Ensembl ID: | ENSG00000113356 | ||
Aliases: | POLR3G, RPC32, RPC7 | ||
Description: | polymerase (RNA) III (DNA directed) polypeptide G (32kD) [Source:HGNC Symbol;Acc:30075] |
Percent Identity: | 79.86 % |
Parental protein coverage: | 64.25 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAGNKGRGRAAYTFNIEAVGFSKGEKLPDVVLKPPPLFPDTDYKPVPLKTGEGEEYMLALKQELRETMKR |
MAGNKG.GRAAYTFNIEAVGFSKG.KLPDVVLKPPPLFPDTDYKPVPLKTGEGE.YMLALKQELRETMKR | |
Retrocopy | MAGNKG*GRAAYTFNIEAVGFSKGKKLPDVVLKPPPLFPDTDYKPVPLKTGEGE*YMLALKQELRETMKR |
Parental | MPYF-IETP-EERQDIERYSKRYMKVYKEEWIPDWRRLPREMMPRNKCKKAGPKPKKAKDAGKGTPLTNT |
MPYF....P.EERQDIERYSKRYMKVYKEEWIPDWRRLPREMMP...................GT.LTNT | |
Retrocopy | MPYF>LKHPHEERQDIERYSKRYMKVYKEEWIPDWRRLPREMMPXXXXXXXXXXXXXXXXXXXGTSLTNT |
Parental | EDVL |
.DVL | |
Retrocopy | ADVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 1 .59 RPM |
bodymap2_adrenal | 0 .02 RPM | 3 .79 RPM |
bodymap2_brain | 0 .00 RPM | 8 .60 RPM |
bodymap2_breast | 0 .10 RPM | 3 .40 RPM |
bodymap2_colon | 0 .00 RPM | 2 .92 RPM |
bodymap2_heart | 0 .02 RPM | 2 .84 RPM |
bodymap2_kidney | 0 .00 RPM | 3 .21 RPM |
bodymap2_liver | 0 .00 RPM | 2 .75 RPM |
bodymap2_lung | 0 .00 RPM | 1 .49 RPM |
bodymap2_lymph_node | 0 .00 RPM | 3 .42 RPM |
bodymap2_ovary | 0 .00 RPM | 2 .95 RPM |
bodymap2_prostate | 0 .00 RPM | 1 .97 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 2 .80 RPM |
bodymap2_testis | 0 .00 RPM | 10 .26 RPM |
bodymap2_thyroid | 0 .32 RPM | 4 .46 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1 .83 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_989 |
Gorilla gorilla | retro_ggor_1119 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006306 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010747 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008379 | 1 retrocopy | |
Homo sapiens | ENSG00000113356 | 2 retrocopies |
retro_hsap_1454 , retro_hsap_1885,
|
Gorilla gorilla | ENSGGOG00000000266 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000014954 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018972 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013749 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005560 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015624 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017068 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000016260 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000008664 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002278 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .06 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .06 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .05 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .04 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .08 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |