RetrogeneDB ID: | retro_rnor_458 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:87832558..87833051(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Polr3g | ||
Ensembl ID: | ENSRNOG00000016260 | ||
Aliases: | None | ||
Description: | DNA-directed RNA polymerase III subunit RPC7 [Source:RefSeq peptide;Acc:NP_001102938] |
Percent Identity: | 78.36 % |
Parental protein coverage: | 74.44 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | MAGNKGRGRAAYTFNIEAVGFSRGEKLPDVVL-KPPPLFPDTDYKPVPLKTGEDEDYMLALKQELRETVK |
..GN.GR.RAAYTFNI.A.GF.RGEKLPDVV...P.PLFPDT...PVPLKTGED.DYMLALKQELRETV. | |
Retrocopy | VTGNIGRCRAAYTFNIIAIGFIRGEKLPDVVM<EPTPLFPDTNNEPVPLKTGEDDDYMLALKQELRETVT |
Parental | -RLPYFIETPEEKQ-DDIE-RYSKRYMKVYKEEWEPDWRRLPREMMPRKKCKKADPKSKAAKATSKGT-T |
.RLP.FI.TPE....DDI..RYSK..MKVYKEEWE.DWRRLPRE.MPRKK.K.ADPKSK.AKATSKGT.. | |
Retrocopy | <RLP*FIGTPEKNK<DDIK<RYSK*CMKVYKEEWELDWRRLPREIMPRKK*KRADPKSKPAKATSKGT<F |
Parental | LMNSTDVLKKIEELERRGEGERSDEENDEKE |
LMNS.DVLKKIEEL.RRGEGERSDEEND.KE | |
Retrocopy | LMNSADVLKKIEELIRRGEGERSDEENDGKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .25 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .21 RPM |
SRP017611_liver | 0 .00 RPM | 8 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006306 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010747 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008379 | 1 retrocopy | |
Homo sapiens | ENSG00000113356 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000000266 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000014954 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018972 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013749 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005560 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015624 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017068 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000016260 | 2 retrocopies |
retro_rnor_458 , retro_rnor_503,
|
Ictidomys tridecemlineatus | ENSSTOG00000008664 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002278 | 2 retrocopies |