RetrogeneDB ID: | retro_ogar_3512 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL874104.1:13229..13901(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000033218 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POLR3G | ||
Ensembl ID: | ENSOGAG00000005560 | ||
Aliases: | None | ||
Description: | polymerase (RNA) III (DNA directed) polypeptide G (32kD) [Source:HGNC Symbol;Acc:30075] |
Percent Identity: | 99.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGNKGRGRAAFTFNVEAVGFSRGEKLPDVVLKPPPPFPDTDYKPAPLKTGESEDYVLALKQELRETMKR |
MAGNKGRGRAAFTFNVEAVGFSRGEKLPDVVLKPPPPFPDTDYKP.PLKTGESEDYVLALKQELRETMKR | |
Retrocopy | MAGNKGRGRAAFTFNVEAVGFSRGEKLPDVVLKPPPPFPDTDYKPVPLKTGESEDYVLALKQELRETMKR |
Parental | MPYFIETPEENQDIERYSKRYMKVYKEEWIPDWRRLPRELMPRKKCKKAGPNSKQAKDRGKGTPLINPSD |
MPYFIETPEENQDIERYSKRYMKVYKEEWIPDWRRLPRELMPRKKCKKAGPNSKQAKDRGKGTPLINPSD | |
Retrocopy | MPYFIETPEENQDIERYSKRYMKVYKEEWIPDWRRLPRELMPRKKCKKAGPNSKQAKDRGKGTPLINPSD |
Parental | VLKKIEELEKQGDGEKSDEENEEKEGSKDKSKEGDDADDEDGAAEQEDYDEEEQEEENDYINSYFEDGDD |
VLKKIEELEKQGDGEKSDEENEEKEGSKDKSKEGDDADDEDGAAEQEDYDEEEQEEENDYINSYFEDGDD | |
Retrocopy | VLKKIEELEKQGDGEKSDEENEEKEGSKDKSKEGDDADDEDGAAEQEDYDEEEQEEENDYINSYFEDGDD |
Parental | FGADSDDNMDEATY |
FGADSDDNMDEATY | |
Retrocopy | FGADSDDNMDEATY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006306 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010747 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008379 | 1 retrocopy | |
Homo sapiens | ENSG00000113356 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000000266 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000014954 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018972 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013749 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005560 | 1 retrocopy |
retro_ogar_3512 ,
|
Pongo abelii | ENSPPYG00000015624 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017068 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000016260 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000008664 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002278 | 2 retrocopies |