RetrogeneDB ID: | retro_nleu_1807 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397310.1:11086928..11087592(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POLR3G | ||
Ensembl ID: | ENSNLEG00000013749 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAGNKGRGR-AAYTFNIEAVGFSKGEKLPDVVLKPPPLFPDTDYKPVPLKTGEGEEYMLALKQELRETMK |
MAGN.GRG..AAYTFNIEAVGFSKGEKLP..VLKPPPLFPD.DYK.VPLKT.E.EEYMLALKQELRETMK | |
Retrocopy | MAGNEGRGGCAAYTFNIEAVGFSKGEKLPYAVLKPPPLFPDADYKSVPLKT-EDEEYMLALKQELRETMK |
Parental | RMPYFIETPEERQDIE-RYSKRYMKVYKEEWIPDWRRLPREMMPRNKCKKAGP-KPKKAKDAGKGTSLTR |
RMPYFIET.EERQDIE.RYSKRYMKVYKEEWIPDWRRLPRE.MPRNKCK..GP.K..K.K........T. | |
Retrocopy | RMPYFIETTEERQDIE<RYSKRYMKVYKEEWIPDWRRLPREIMPRNKCKNTGP<KTQKSKRR-RQRHFTN |
Parental | TADVLKKIEELEKRGDGEKSDEENEEKEGSKEKSKEGDDDDDDDAAEQEEYDEEEQEEENDYINSYFEDG |
T.DVLKKIE.L.K.GDGE.SDEENE.KEGSKE.SKEG.DDDDDDAAEQE.YDEEEQEEENDYINSYFEDG | |
Retrocopy | TSDVLKKIEKLGKKGDGENSDEENEKKEGSKEESKEGGDDDDDDAAEQEGYDEEEQEEENDYINSYFEDG |
Parental | DDFGADSDDNMDEATY |
.DFG.DSDDNMDEATY | |
Retrocopy | NDFGPDSDDNMDEATY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006306 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010747 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008379 | 1 retrocopy | |
Homo sapiens | ENSG00000113356 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000000266 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000014954 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018972 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013749 | 1 retrocopy |
retro_nleu_1807 ,
|
Otolemur garnettii | ENSOGAG00000005560 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015624 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017068 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000016260 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000008664 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002278 | 2 retrocopies |