RetrogeneDB ID: | retro_itri_18 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393319.1:390985..391657(-) | ||
Located in intron of: | ENSSTOG00000025289 | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000019433 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000008664 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGNKGRGRAAYTFNIEAVGFSRGEKLPDVVLKPPPLFPDTDYKPVPLKTGEGEDYMLALKQELRETMKR |
MAGNKGRGRAAYTFNIEAVGFSRGEKLPDVVLKPPPLFPDTDYKPVP.KTGEGEDYMLALKQELRETMKR | |
Retrocopy | MAGNKGRGRAAYTFNIEAVGFSRGEKLPDVVLKPPPLFPDTDYKPVPPKTGEGEDYMLALKQELRETMKR |
Parental | MPYFIETPEEKQDIERYSKRYMKVYKEEWKPDWRRLPREMMPRKKCKKADPKSKKAKDTDKGTSLANTAD |
M.YFIETPEEKQDIERYSKRYMKVYKEEWK.DWRRLPREMMPRKK.KKADPKSKKAKDTDKGT.LANTAD | |
Retrocopy | MLYFIETPEEKQDIERYSKRYMKVYKEEWKADWRRLPREMMPRKKSKKADPKSKKAKDTDKGTLLANTAD |
Parental | VLKKIEELEKRGDGEKSDEENEEKEGSKEKSKEGDDDDDDNEDAAEEEYDEEEQEEENDYINSYFEDGDD |
VLKKIEELEKRG.GEKSDEENEEKEGSKEKSKEGDDDD.DNEDAAEEEY..EEQEEEN.YINSYFEDGDD | |
Retrocopy | VLKKIEELEKRGNGEKSDEENEEKEGSKEKSKEGDDDDNDNEDAAEEEYAKEEQEEENGYINSYFEDGDD |
Parental | FGAESDDNMDEATY |
FGAESDDNMDEATY | |
Retrocopy | FGAESDDNMDEATY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006306 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010747 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008379 | 1 retrocopy | |
Homo sapiens | ENSG00000113356 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000000266 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000014954 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018972 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013749 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005560 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015624 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017068 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000016260 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000008664 | 1 retrocopy |
retro_itri_18 ,
|
Tupaia belangeri | ENSTBEG00000002278 | 2 retrocopies |