RetrogeneDB ID: | retro_pabe_1564 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 18:60878471..60879126(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POLR3G | ||
Ensembl ID: | ENSPPYG00000015624 | ||
Aliases: | None | ||
Description: | polymerase (RNA) III (DNA directed) polypeptide G (32kD) [Source:HGNC Symbol;Acc:30075] |
Percent Identity: | 80.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAGNKGRG-RAAYTFNIEAVGFSKGEKLPDVVLKPPPLFPDTDYKPVPLKTGEGEEYMLALKQELRETMR |
MAGNKGRG..AAYTFNIEAVGFSKGEKLP.VVLKPPPLFPD.DYK.V.LKT.E.E.YMLALK.ELRETM. | |
Retrocopy | MAGNKGRG*CAAYTFNIEAVGFSKGEKLPYVVLKPPPLFPDADYKSVSLKT-EDEGYMLALKPELRETMK |
Parental | RMPYFIETPEERQDVERYSKRYMKVYKEEWIPDWRRLPREMMPRNKCKKAGP-KPKKAKDAGKGTSLTNT |
RMPYFIETPEERQD.ERYSKRYMKVYKEEWIPDWRRLPRE.MPRNKCK..GP.K..K.K........TNT | |
Retrocopy | RMPYFIETPEERQDIERYSKRYMKVYKEEWIPDWRRLPRERMPRNKCKNTGP<KTQKGK-RHRQRHFTNT |
Parental | ADVLKK-IEELEKRGDGEKSDEENEEKEGSKEKSKEGDDDDDDDAAEQEEYDEEEQEEENDYINSYFEDG |
..VLKK.IEEL.K.GDGE.SDEENE..EGSKE.SKEGDDDDD.DAAEQE.YDEEE...ENDYINSYFEDG | |
Retrocopy | SEVLKK<IEELGKKGDGENSDEENEKEEGSKEESKEGDDDDDNDAAEQEGYDEEE---ENDYINSYFEDG |
Parental | DDFGADSDDNMDEATY |
.DFG.DSDDN..EATY | |
Retrocopy | NDFGPDSDDNVYEATY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1 .44 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .01 RPM |
SRP007412_heart | 0 .00 RPM | 1 .17 RPM |
SRP007412_kidney | 0 .00 RPM | 1 .66 RPM |
SRP007412_liver | 0 .00 RPM | 1 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006306 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010747 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008379 | 1 retrocopy | |
Homo sapiens | ENSG00000113356 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000000266 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000014954 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018972 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013749 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005560 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015624 | 1 retrocopy |
retro_pabe_1564 ,
|
Pan troglodytes | ENSPTRG00000017068 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000016260 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000008664 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002278 | 2 retrocopies |