RetrogeneDB ID: | retro_hsap_1669 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 16:24618169..24618362(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACBD7 | ||
Ensembl ID: | ENSG00000176244 | ||
Aliases: | None | ||
Description: | acyl-CoA binding domain containing 7 [Source:HGNC Symbol;Acc:17715] |
Percent Identity: | 72.31 % |
Parental protein coverage: | 72.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DDGELKELYGLYKQAIVGDINIACPGMLD-LKGKAKWEAWNLKKGLSTEDATSAYISKAKELIEK |
D..ELK.L.GLYKQAI.GDINI...GMLD.LKGKAK..AW.L.K.LS.EDATS..ISKAKE.IEK | |
Retrocopy | DNKELKKLDGLYKQAIIGDINIEYLGMLD>LKGKAKCAAWTLQKRLSKEDATSVSISKAKEPIEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 0 .24 RPM |
bodymap2_adrenal | 0 .00 RPM | 0 .06 RPM |
bodymap2_brain | 0 .00 RPM | 43 .48 RPM |
bodymap2_breast | 0 .00 RPM | 0 .43 RPM |
bodymap2_colon | 0 .00 RPM | 0 .14 RPM |
bodymap2_heart | 0 .00 RPM | 0 .02 RPM |
bodymap2_kidney | 0 .00 RPM | 0 .27 RPM |
bodymap2_liver | 0 .00 RPM | 0 .00 RPM |
bodymap2_lung | 0 .00 RPM | 1 .04 RPM |
bodymap2_lymph_node | 0 .00 RPM | 0 .26 RPM |
bodymap2_ovary | 0 .00 RPM | 0 .62 RPM |
bodymap2_prostate | 0 .00 RPM | 0 .17 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |
bodymap2_testis | 0 .00 RPM | 1 .92 RPM |
bodymap2_thyroid | 0 .00 RPM | 0 .51 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1132 |
Gorilla gorilla | retro_ggor_1257 |
Pongo abelii | retro_pabe_1376 |
Macaca mulatta | retro_mmul_1577 |
Callithrix jacchus | retro_cjac_1017 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009249 | 1 retrocopy | |
Felis catus | ENSFCAG00000027337 | 1 retrocopy | |
Homo sapiens | ENSG00000155368 | 3 retrocopies | |
Homo sapiens | ENSG00000176244 | 2 retrocopies |
retro_hsap_1501, retro_hsap_1669 ,
|
Gorilla gorilla | ENSGGOG00000015777 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000010587 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012353 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000002111 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000041316 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000007153 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |