RetrogeneDB ID:

retro_pabe_1252

Retrocopy
location
Organism:Orangutan (Pongo abelii)
Coordinates:15:53709683..53709947(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ACBD7
Ensembl ID:ENSPPYG00000002111
Aliases:None
Description:acyl-CoA binding domain containing 7 [Source:HGNC Symbol;Acc:17715]


Retrocopy-Parental alignment summary:






>retro_pabe_1252
ATGTCCCTGCAGGCTGATTTTGACATGGTCACAGAAGATGTGAGGAAGCTGAAAACAAGACCAGTTGATGAAGAACTGAA
AGAACTGTATGGGCTTTACAAACAAGCTGTAATTGGAAACATTAATATTGAGTGTTCAGAAATGCTAGAATTAAAAGGCA
AGGCCAAATGGGAAGCACAGAACCTCCAAAAACGATTGTCAGAGGAAGATATGATGAGTGCCTTTATTTCTAAAGCTGAA
GAACTGATAGAAAAATATGGAATT

ORF - retro_pabe_1252 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75. %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMALQADFDRAAEDVRKLKARPDDGELKELYGLYKQVIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTED
M.LQADFD...EDVRKLK.RP.D.ELKELYGLYKQ...G.INI.C..ML.LKGKAKWEA.NL.K.LS.ED
RetrocopyMSLQADFDMVTEDVRKLKTRPVDEELKELYGLYKQAVIGNINIECSEMLELKGKAKWEAQNLQKRLSEED
ParentalAMSAYISKAKELIEKYGI
.MSA.ISKA.ELIEKYGI
RetrocopyMMSAFISKAEELIEKYGI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 6 .30 RPM
SRP007412_cerebellum 0 .00 RPM 0 .97 RPM
SRP007412_heart 0 .00 RPM 0 .03 RPM
SRP007412_kidney 0 .00 RPM 0 .10 RPM
SRP007412_liver 0 .00 RPM 0 .06 RPM
Pongo abelii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_pabe_1252 retrocopy.
Pongo abelii was not studied using FANTOM5 data.
retro_pabe_1252 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_pabe_1252 has 4 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_1501
Pan troglodytes retro_ptro_1018
Gorilla gorilla retro_ggor_1152
Macaca mulatta retro_mmul_2141

Parental genes homology:
Parental genes homology involve 10 parental genes, and 19 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000092491 retrocopy
Felis catus ENSFCAG000000273371 retrocopy
Homo sapiens ENSG000001762442 retrocopies
Gorilla gorilla ENSGGOG000000157773 retrocopies
Macaca mulatta ENSMMUG000000105872 retrocopies
Nomascus leucogenys ENSNLEG000000123532 retrocopies
Pongo abelii ENSPPYG00000002111 2 retrocopies
retro_pabe_1252 , retro_pabe_1376,
Pongo abelii ENSPPYG000000127882 retrocopies
Pan troglodytes ENSPTRG000000413163 retrocopies
Pteropus vampyrus ENSPVAG000000071531 retrocopy



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