RetrogeneDB ID:

retro_mmul_2141

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:7:35174032..35174297(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ACBD7
Ensembl ID:ENSMMUG00000010587
Aliases:None
Description:acyl-CoA-binding domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001245104]


Retrocopy-Parental alignment summary:






>retro_mmul_2141
GTGTCCCTGCAGGCTGATTTTGACATGATCACGGAAGATGTGAGGAAGCTGAAAACAAGACCAGATGATGAAGAACTGAA
AGAACTCTATGGGTTTTAGAAACAAGCTGTAAATTGGAAACATTACTATTGAGTGTCCAGAAATGCTAGAATTAAAAGGC
AAGGCCAAATGGGAAGCACAGAACCTCCAAAAAGGATTATTAAAGGAAGATACAATGAGTGCCTTTATTTCTAAAGCAGA
AGAGCTGATAGAAAAATATGGAATT

ORF - retro_mmul_2141 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.28 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMALQADFDRAAEDVRKLKARPDDGELKELYGLYKQAI-IGDINIECPGMLDLKGKAKWEAWNLKKGLSTE
..LQADFD...EDVRKLK.RPDD.ELKELYG..KQA..IG.I.IECP.ML.LKGKAKWEA.NL.KGL..E
RetrocopyVSLQADFDMITEDVRKLKTRPDDEELKELYGF*KQAV>IGNITIECPEMLELKGKAKWEAQNLQKGLLKE
ParentalDAMSAYISKAKELIEKYGI
D.MSA.ISKA.ELIEKYGI
RetrocopyDTMSAFISKAEELIEKYGI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 7 .73 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 6 .51 RPM
SRP007412_cerebellum 0 .00 RPM 4 .39 RPM
SRP007412_heart 0 .00 RPM 0 .00 RPM
SRP007412_kidney 0 .00 RPM 0 .23 RPM
SRP007412_liver 0 .00 RPM 0 .16 RPM
SRP007412_testis 0 .00 RPM 0 .08 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2141 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2141 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_2141 has 4 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_1501
Pan troglodytes retro_ptro_1018
Gorilla gorilla retro_ggor_1152
Pongo abelii retro_pabe_1252

Parental genes homology:
Parental genes homology involve 10 parental genes, and 20 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000092491 retrocopy
Felis catus ENSFCAG000000273371 retrocopy
Homo sapiens ENSG000001762442 retrocopies
Gorilla gorilla ENSGGOG000000157773 retrocopies
Macaca mulatta ENSMMUG00000010587 2 retrocopies
retro_mmul_1577, retro_mmul_2141 ,
Macaca mulatta ENSMMUG000000111263 retrocopies
Nomascus leucogenys ENSNLEG000000123532 retrocopies
Pongo abelii ENSPPYG000000021112 retrocopies
Pan troglodytes ENSPTRG000000413163 retrocopies
Pteropus vampyrus ENSPVAG000000071531 retrocopy



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