RetrogeneDB ID:

retro_nleu_1720

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397306.1:18120040..18120303(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ACBD7
Ensembl ID:ENSNLEG00000012353
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1720
ATGTCCCTGCAGGCTGATTTTGACATGGTCACAGAAGATGTGAGGAAGCTGAAAACAAGACCAGATGATGAAGAACTGAA
AGAACTGTATGGGCTTTACAAACAAGCTGTAATTGGAAACGTTAATATTGAGTGTTCAGAAATGCTAGAATTAAAAGGCA
AGGCCAAATGGGAAGCACAGAACCTCCAAAAAGGATGTCAGAGGAAGATGTGATGAGTGCCTTTATTTATAAAGCCAAAG
AGCTGATAGAAAAATATGGAATT

ORF - retro_nleu_1720 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.91 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLGIQADFDRAAKDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKG-LSTE
...QADFD....DVRKLK.RPDD.ELKELYGLYKQA..G..NI.C..ML.LKGKAKWEA.NL.KG..S.E
RetrocopyMSLQADFDMVTEDVRKLKTRPDDEELKELYGLYKQAVIGNVNIECSEMLELKGKAKWEAQNLQKG<MSEE
ParentalDAMSAYISKAKELIEKYGI
D.MSA.I.KAKELIEKYGI
RetrocopyDVMSAFIYKAKELIEKYGI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1720 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 19 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000092491 retrocopy
Felis catus ENSFCAG000000273371 retrocopy
Homo sapiens ENSG000001762442 retrocopies
Gorilla gorilla ENSGGOG000000157773 retrocopies
Macaca mulatta ENSMMUG000000105872 retrocopies
Nomascus leucogenys ENSNLEG000000102902 retrocopies
Nomascus leucogenys ENSNLEG00000012353 2 retrocopies
retro_nleu_1147, retro_nleu_1720 ,
Pongo abelii ENSPPYG000000021112 retrocopies
Pan troglodytes ENSPTRG000000413163 retrocopies
Pteropus vampyrus ENSPVAG000000071531 retrocopy



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