RetrogeneDB ID: retro_nleu_1147

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397283.1:4079090..4079282(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACBD7
• Ensembl ID: ENSNLEG00000012353
• Aliases: None
• Description: None

Sequence

>retro_nleu_1147
GATAATAAAGAACCGAATAAACTCGATGGACTTTACAAACAAGCTATAATTGGAGACATTAATATTGAGTATCCGAGAAT
GCTGGATTTAAAGGGCAAGGCCAAATGGGAAGCATGGACCCTCCAAAAAGGGTTGTCCAAGGAAGATGCAACGAGTGTCT
CTATTTCTAAGGCAAAAGAGCTGATAGAAAAA

Alignment

ORF - retro_nleu_1147 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75. %
• Parental protein coverage: 72.73 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDAMSAYISKAKELIEK
          D..E...L.GLYKQAI.GDINI..P.MLDLKGKAKWEAW.L.KGLS.EDA.S..ISKAKELIEK
Retrocopy DNKEPNKLDGLYKQAIIGDINIEYPRMLDLKGKAKWEAWTLQKGLSKEDATSVSISKAKELIEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_1147 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000009249	1 retrocopy	retro_cjac_1017,
Felis catus	ENSFCAG00000027337	1 retrocopy	retro_fcat_683,
Homo sapiens	ENSG00000176244	2 retrocopies	retro_hsap_1501, retro_hsap_1669,
Gorilla gorilla	ENSGGOG00000015777	3 retrocopies	retro_ggor_1152, retro_ggor_1257, retro_ggor_625,
Macaca mulatta	ENSMMUG00000010587	2 retrocopies	retro_mmul_1577, retro_mmul_2141,
Nomascus leucogenys	ENSNLEG00000010290	2 retrocopies	retro_nleu_1170, retro_nleu_807,
Nomascus leucogenys	ENSNLEG00000012353	2 retrocopies	retro_nleu_1147 , retro_nleu_1720,
Pongo abelii	ENSPPYG00000002111	2 retrocopies	retro_pabe_1252, retro_pabe_1376,
Pan troglodytes	ENSPTRG00000041316	3 retrocopies	retro_ptro_1018, retro_ptro_1132, retro_ptro_530,
Pteropus vampyrus	ENSPVAG00000007153	1 retrocopy	retro_pvam_649,