RetrogeneDB ID: | retro_hsap_241 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:160640059..160640612(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000235101 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SET | ||
Ensembl ID: | ENSG00000119335 | ||
Aliases: | SET, 2PP2A, I2PP2A, IGAAD, IPP2A2, PHAPII, TAF-I, TAF-IBETA | ||
Description: | SET nuclear oncogene [Source:HGNC Symbol;Acc:10760] |
Percent Identity: | 75.68 % |
Parental protein coverage: | 67.91 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | DRLNEQASEEILKVEQKYNKLRQP-FFQKRSE--LIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTR |
.RL.EQASEE.LKVEQK.NKL.Q..FF.......L.A.IP.FWVT.FVNHP.VSALL.EEDEEALHY.TR | |
Retrocopy | NRLHEQASEENLKVEQK*NKLCQS>FFRRGQN*SLMAQIPHFWVTSFVNHPRVSALLVEEDEEALHYMTR |
Parental | VEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASR |
VEVT.FED.K.GYRIDFYFDE.PYFENK.LSKEFHLNESGDPSSKSTEIKWKS.KD.T.RSS.T.NKASR | |
Retrocopy | VEVT*FEDTKLGYRIDFYFDEHPYFENKLLSKEFHLNESGDPSSKSTEIKWKS*KDVTNRSSRTKNKASR |
Parental | KRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPD |
KRQ.E.PESF.T.FTDHSDAGA.EL.EVI....WPNP.Q..LVP. | |
Retrocopy | KRQPEAPESFLTCFTDHSDAGAGEL*EVITGSTWPNP*QCCLVPN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 278 .75 RPM |
bodymap2_adrenal | 0 .20 RPM | 304 .11 RPM |
bodymap2_brain | 0 .00 RPM | 228 .68 RPM |
bodymap2_breast | 0 .00 RPM | 196 .89 RPM |
bodymap2_colon | 0 .00 RPM | 411 .87 RPM |
bodymap2_heart | 0 .00 RPM | 153 .49 RPM |
bodymap2_kidney | 0 .00 RPM | 226 .29 RPM |
bodymap2_liver | 0 .00 RPM | 103 .30 RPM |
bodymap2_lung | 0 .00 RPM | 285 .23 RPM |
bodymap2_lymph_node | 0 .05 RPM | 229 .77 RPM |
bodymap2_ovary | 0 .00 RPM | 454 .22 RPM |
bodymap2_prostate | 0 .00 RPM | 279 .46 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 293 .35 RPM |
bodymap2_testis | 0 .96 RPM | 324 .90 RPM |
bodymap2_thyroid | 0 .00 RPM | 345 .95 RPM |
bodymap2_white_blood_cells | 0 .06 RPM | 357 .77 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_209 |
Pongo abelii | retro_pabe_414 |
Macaca mulatta | retro_mmul_419 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015686 | 7 retrocopies | |
Bos taurus | ENSBTAG00000020959 | 8 retrocopies | |
Canis familiaris | ENSCAFG00000032728 | 2 retrocopies | |
Felis catus | ENSFCAG00000005848 | 2 retrocopies | |
Homo sapiens | ENSG00000119335 | 14 retrocopies | |
Myotis lucifugus | ENSMLUG00000014291 | 13 retrocopies | |
Macaca mulatta | ENSMMUG00000008532 | 11 retrocopies | |
Mustela putorius furo | ENSMPUG00000013069 | 10 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017595 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007501 | 12 retrocopies | |
Otolemur garnettii | ENSOGAG00000007635 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019659 | 17 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000010546 | 6 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .43 RPM |
CEU_NA11843 | 0 .60 RPM |
CEU_NA11930 | 1 .47 RPM |
CEU_NA12004 | 0 .30 RPM |
CEU_NA12400 | 0 .63 RPM |
CEU_NA12751 | 0 .63 RPM |
CEU_NA12760 | 0 .13 RPM |
CEU_NA12827 | 1 .04 RPM |
CEU_NA12872 | 0 .65 RPM |
CEU_NA12873 | 0 .86 RPM |
FIN_HG00183 | 0 .93 RPM |
FIN_HG00277 | 0 .78 RPM |
FIN_HG00315 | 0 .28 RPM |
FIN_HG00321 | 0 .73 RPM |
FIN_HG00328 | 0 .54 RPM |
FIN_HG00338 | 0 .34 RPM |
FIN_HG00349 | 0 .40 RPM |
FIN_HG00375 | 0 .24 RPM |
FIN_HG00377 | 0 .38 RPM |
FIN_HG00378 | 0 .30 RPM |
GBR_HG00099 | 0 .41 RPM |
GBR_HG00111 | 0 .99 RPM |
GBR_HG00114 | 0 .79 RPM |
GBR_HG00119 | 0 .74 RPM |
GBR_HG00131 | 0 .95 RPM |
GBR_HG00133 | 0 .58 RPM |
GBR_HG00134 | 1 .07 RPM |
GBR_HG00137 | 1 .02 RPM |
GBR_HG00142 | 0 .61 RPM |
GBR_HG00143 | 0 .35 RPM |
TSI_NA20512 | 0 .34 RPM |
TSI_NA20513 | 1 .11 RPM |
TSI_NA20518 | 0 .36 RPM |
TSI_NA20532 | 0 .88 RPM |
TSI_NA20538 | 0 .23 RPM |
TSI_NA20756 | 0 .26 RPM |
TSI_NA20765 | 0 .68 RPM |
TSI_NA20771 | 0 .54 RPM |
TSI_NA20786 | 0 .10 RPM |
TSI_NA20798 | 0 .47 RPM |
YRI_NA18870 | 0 .54 RPM |
YRI_NA18907 | 0 .24 RPM |
YRI_NA18916 | 0 .69 RPM |
YRI_NA19093 | 0 .13 RPM |
YRI_NA19099 | 0 .40 RPM |
YRI_NA19114 | 0 .16 RPM |
YRI_NA19118 | 0 .17 RPM |
YRI_NA19213 | 0 .50 RPM |
YRI_NA19214 | 0 .20 RPM |
YRI_NA19223 | 0 .88 RPM |