RetrogeneDB ID: | retro_hsap_806 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:86005980..86006638(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000255222 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SET | ||
Ensembl ID: | ENSG00000119335 | ||
Aliases: | SET, 2PP2A, I2PP2A, IGAAD, IPP2A2, PHAPII, TAF-I, TAF-IBETA | ||
Description: | SET nuclear oncogene [Source:HGNC Symbol;Acc:10760] |
Percent Identity: | 74.11 % |
Parental protein coverage: | 83.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | ASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDI |
A.EE.LK.EQKYNKL.Q.FFQ.RSELIAKIPNF.VT.FVNHPQ.SALLGEEDEEAL.YLT.VEVTEFEDI | |
Retrocopy | ANEETLKTEQKYNKLGQLFFQMRSELIAKIPNFGVTAFVNHPQMSALLGEEDEEALPYLTSVEVTEFEDI |
Parental | KSGYRIDFYF-DENPYFENKVLSKEFHLNESGDPSSKS-TEIKWKSGKDLTKRSSQTQNKASRKRQHEEP |
K.GYR..F.F.D.NP.F.NKVLSK.FHLNESG.PSS.S.T.IKWKSGKDL.K..SQ.QN.ASRKRQH.EP | |
Retrocopy | KPGYRM-FLF>DKNPDFKNKVLSKKFHLNESGAPSSNS<TKIKWKSGKDLMKNASQMQNNASRKRQHGEP |
Parental | ESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPD-MDDEEGEGEEDDDDDEEEEGLEDIDEEGDED |
ESFFTW.T.HSDAGADE.G.VIKD.IWPN.LQYYLVP..MDDEEGEGE..D.D..E.EG.ED...EG.E. | |
Retrocopy | ESFFTWLTGHSDAGADE*GKVIKDGIWPNQLQYYLVPN>MDDEEGEGEKEDEDRDEDEG-EDKGDEGEEG |
Parental | EGEEDEDDDEGEEG |
E..E.EDD.....G | |
Retrocopy | EEDEGEDD*QNTNG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 278 .75 RPM |
bodymap2_adrenal | 0 .12 RPM | 304 .11 RPM |
bodymap2_brain | 0 .02 RPM | 228 .68 RPM |
bodymap2_breast | 0 .35 RPM | 196 .89 RPM |
bodymap2_colon | 0 .39 RPM | 411 .87 RPM |
bodymap2_heart | 0 .15 RPM | 153 .49 RPM |
bodymap2_kidney | 0 .10 RPM | 226 .29 RPM |
bodymap2_liver | 0 .00 RPM | 103 .30 RPM |
bodymap2_lung | 0 .00 RPM | 285 .23 RPM |
bodymap2_lymph_node | 0 .13 RPM | 229 .77 RPM |
bodymap2_ovary | 0 .15 RPM | 454 .22 RPM |
bodymap2_prostate | 0 .02 RPM | 279 .46 RPM |
bodymap2_skeletal_muscle | 0 .02 RPM | 293 .35 RPM |
bodymap2_testis | 0 .25 RPM | 324 .90 RPM |
bodymap2_thyroid | 0 .09 RPM | 345 .95 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 357 .77 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_561 |
Pongo abelii | retro_pabe_720 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015686 | 7 retrocopies | |
Bos taurus | ENSBTAG00000020959 | 8 retrocopies | |
Canis familiaris | ENSCAFG00000032728 | 2 retrocopies | |
Felis catus | ENSFCAG00000005848 | 2 retrocopies | |
Homo sapiens | ENSG00000119335 | 14 retrocopies | |
Myotis lucifugus | ENSMLUG00000014291 | 13 retrocopies | |
Macaca mulatta | ENSMMUG00000008532 | 11 retrocopies | |
Mustela putorius furo | ENSMPUG00000013069 | 10 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017595 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007501 | 12 retrocopies | |
Otolemur garnettii | ENSOGAG00000007635 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019659 | 17 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000010546 | 6 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .06 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .07 RPM |
CEU_NA12004 | 0 .11 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .05 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .06 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .09 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .05 RPM |
FIN_HG00377 | 0 .08 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .06 RPM |
GBR_HG00111 | 0 .06 RPM |
GBR_HG00114 | 0 .08 RPM |
GBR_HG00119 | 0 .05 RPM |
GBR_HG00131 | 0 .06 RPM |
GBR_HG00133 | 0 .12 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .08 RPM |
GBR_HG00142 | 0 .06 RPM |
GBR_HG00143 | 0 .10 RPM |
TSI_NA20512 | 0 .06 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .06 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .17 RPM |
TSI_NA20771 | 0 .09 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .09 RPM |
YRI_NA18870 | 0 .10 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .06 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .06 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .07 RPM |
YRI_NA19223 | 0 .12 RPM |