Parental gene:

SET, ENSG00000119335

Aliases:SET, 2PP2A, I2PP2A, IGAAD, IPP2A2, PHAPII, TAF-I, TAF-IBETA
Description:SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]
Organism:Human (Homo sapiens)
Coordinates:9:131445702..131458679(+)


>ENSG00000119335
ATGGCCCCTAAACGCCAGTCTCCACTCCCGCCTCAAAAGAAGAAACCAAGACCACCTCCTGCTCTGGGACCGGAGGAGAC
ATCGGCCTCTGCAGGCTTGCCGAAGAAGGGAGAAAAAGAACAGCAAGAAGCGATTGAACACATTGATGAAGTACAAAATG
AAATAGACAGACTTAATGAACAAGCCAGTGAGGAGATTTTGAAAGTAGAACAGAAATATAACAAACTCCGCCAACCATTT
TTTCAGAAGAGGTCAGAATTGATCGCCAAAATCCCAAATTTTTGGGTAACAACATTTGTCAACCATCCACAAGTGTCTGC
ACTGCTTGGGGAGGAAGATGAAGAGGCACTGCATTATTTGACCAGAGTTGAAGTGACAGAATTTGAAGATATTAAATCAG
GTTACAGAATAGATTTTTATTTTGATGAAAATCCTTACTTTGAAAATAAAGTTCTCTCCAAAGAATTTCATCTGAATGAG
AGTGGTGATCCATCTTCGAAGTCCACCGAAATCAAATGGAAATCTGGAAAGGATTTGACGAAACGTTCGAGTCAAACGCA
GAATAAAGCCAGCAGGAAGAGGCAGCATGAGGAACCAGAGAGCTTCTTTACCTGGTTTACTGACCATTCTGATGCAGGTG
CTGATGAGTTAGGAGAGGTCATCAAAGATGATATTTGGCCAAACCCATTACAGTACTACTTGGTTCCCGATATGGATGAT
GAAGAAGGAGAAGGAGAAGAAGATGATGATGATGATGAAGAGGAGGAAGGATTAGAAGATATTGACGAAGAAGGGGATGA
GGATGAAGGTGAAGAAGATGAAGATGATGATGAAGGGGAGGAAGGAGAGGAGGATGAAGGAGAAGATGACTAA

Library Parental gene expression (RPM)
bodymap2_liver 103 .30 RPM
bodymap2_lung 285 .23 RPM
bodymap2_breast 196 .89 RPM
bodymap2_adipose 278 .75 RPM
bodymap2_adrenal 304 .11 RPM
bodymap2_skeletal_muscle 293 .35 RPM
bodymap2_thyroid 345 .95 RPM
bodymap2_prostate 279 .46 RPM
bodymap2_colon 411 .87 RPM
bodymap2_testis 324 .90 RPM
bodymap2_brain 228 .68 RPM
bodymap2_heart 153 .49 RPM
bodymap2_white_blood_cells 357 .77 RPM
bodymap2_lymph_node 229 .77 RPM
bodymap2_ovary 454 .22 RPM
bodymap2_kidney 226 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015686 possible_ortholog 7 retrogenes
retro_amel_1093, retro_amel_1201, retro_amel_1459, retro_amel_1675, retro_amel_530, retro_amel_631, retro_amel_634,
Bos taurus ENSBTAG00000020959 possible_ortholog 8 retrogenes
retro_btau_1179, retro_btau_1490, retro_btau_1519, retro_btau_1556, retro_btau_464, retro_btau_469, retro_btau_749, retro_btau_955,
Canis familiaris ENSCAFG00000032728 possible_ortholog 2 retrogenes
retro_cfam_47, retro_cfam_83,
Felis catus ENSFCAG00000005848 possible_ortholog 2 retrogenes
retro_fcat_130, retro_fcat_89,
Myotis lucifugus ENSMLUG00000014291 possible_ortholog 13 retrogenes
retro_mluc_1026, retro_mluc_1120, retro_mluc_1673, retro_mluc_1977, retro_mluc_2098, retro_mluc_2188, retro_mluc_2361, retro_mluc_2412, retro_mluc_2584, retro_mluc_419, retro_mluc_524, retro_mluc_855, retro_mluc_881,
Macaca mulatta ENSMMUG00000008532 possible_ortholog 11 retrogenes
retro_mmul_1133, retro_mmul_1261, retro_mmul_1534, retro_mmul_2096, retro_mmul_2175, retro_mmul_2241, retro_mmul_2262, retro_mmul_2614, retro_mmul_362, retro_mmul_419, retro_mmul_569,
Mustela putorius furo ENSMPUG00000013069 possible_ortholog 10 retrogenes
retro_mputfur_1330, retro_mputfur_1556, retro_mputfur_1581, retro_mputfur_1605, retro_mputfur_221, retro_mputfur_274, retro_mputfur_286, retro_mputfur_723, retro_mputfur_785, retro_mputfur_799,
Nomascus leucogenys ENSNLEG00000017595 possible_ortholog 2 retrogenes
retro_nleu_108, retro_nleu_870,
Oryctolagus cuniculus ENSOCUG00000007501 possible_ortholog 12 retrogenes
retro_ocun_1107, retro_ocun_1110, retro_ocun_1234, retro_ocun_1311, retro_ocun_1563, retro_ocun_276, retro_ocun_407, retro_ocun_421, retro_ocun_423, retro_ocun_476, retro_ocun_859, retro_ocun_923,
Otolemur garnettii ENSOGAG00000007635 possible_ortholog 13 retrogenes
retro_ogar_115, retro_ogar_1370, retro_ogar_3084, retro_ogar_3186, retro_ogar_3195, retro_ogar_3289, retro_ogar_447, retro_ogar_465, retro_ogar_543, retro_ogar_565, retro_ogar_806, retro_ogar_899, retro_ogar_934,
Pongo abelii ENSPPYG00000019659 possible_ortholog 17 retrogenes
retro_pabe_1076, retro_pabe_1110, retro_pabe_1150, retro_pabe_1218, retro_pabe_1452, retro_pabe_1717, retro_pabe_1771, retro_pabe_2549, retro_pabe_2557, retro_pabe_2740, retro_pabe_299, retro_pabe_3667, retro_pabe_400, retro_pabe_414, retro_pabe_470, retro_pabe_720, retro_pabe_838,
Ictidomys tridecemlineatus ENSSTOG00000010546 possible_ortholog 6 retrogenes
retro_itri_1204, retro_itri_1588, retro_itri_477, retro_itri_529, retro_itri_603, retro_itri_876,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_241 75.68 67.91
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2. retro_hsap_269 78.66 81.72
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3. retro_hsap_420 95.74 81.03
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4. retro_hsap_806 74.11 83.40
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5. retro_hsap_1336 85.00 82.41
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6. retro_hsap_1389 74.57 100.00
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7. retro_hsap_1847 89.78 80.51
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8. retro_hsap_2719 73.20 70.90
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9. retro_hsap_2721 97.46 81.38
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10. retro_hsap_3075 85.10 87.93
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11. retro_hsap_3088 55.74 68.05
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12. retro_hsap_3326 89.41 58.62
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13. retro_hsap_3358 88.84 73.45
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14. retro_hsap_4722 88.66 82.07
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Download FASTA sequences of all ENSG00000119335 retrocopies