RetrogeneDB ID: | retro_hsap_3605 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:65443235..65443730(-) | ||
Located in intron of: | ENSG00000188107 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000243828 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM98 | ||
Ensembl ID: | ENSG00000006042 | ||
Aliases: | None | ||
Description: | transmembrane protein 98 [Source:HGNC Symbol;Acc:24529] |
Percent Identity: | 75.15 % |
Parental protein coverage: | 74.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | ETVVIVAIGVLATIFLASFAALVLVCRQRYCRPRDLLQRYDSKPIVDLIGAMETQSEPSELELDDVVITN |
...VIVAI.VLATIFLA.FA.LV.V..QRYC.P.DLLQRYDSKPI..L.GAMETQSE.SELELDDV.I.. | |
Retrocopy | KATVIVAISVLATIFLALFAVLVVV*VQRYCWPGDLLQRYDSKPIMSLLGAMETQSELSELELDDVIIAH |
Parental | PHIEAILENEDWIEDASGLMSHCIAILKICHTLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDD |
..IE.ILENEDWI.DA.GLMSHCI.ILKICHTL.EKLVAMTMGS.A..KTS..VS.IIVVAK.I.PRVDD | |
Retrocopy | SGIEPILENEDWI*DALGLMSHCIVILKICHTLREKLVAMTMGSEAEKKTSTTVSSIIVVAKWIIPRVDD |
Parental | VVKSMYPPLDPKLLDARTTALLLSV |
VVKS.Y..L..KLLD...TALLLSV | |
Retrocopy | VVKSVYHLLSTKLLDVSMTALLLSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 10 .24 RPM |
bodymap2_adrenal | 0 .00 RPM | 13 .51 RPM |
bodymap2_brain | 0 .00 RPM | 29 .02 RPM |
bodymap2_breast | 0 .00 RPM | 15 .29 RPM |
bodymap2_colon | 0 .00 RPM | 36 .62 RPM |
bodymap2_heart | 0 .00 RPM | 5 .72 RPM |
bodymap2_kidney | 0 .00 RPM | 14 .68 RPM |
bodymap2_liver | 0 .00 RPM | 5 .62 RPM |
bodymap2_lung | 0 .00 RPM | 31 .91 RPM |
bodymap2_lymph_node | 0 .00 RPM | 18 .62 RPM |
bodymap2_ovary | 0 .00 RPM | 112 .75 RPM |
bodymap2_prostate | 0 .00 RPM | 45 .59 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 1 .38 RPM |
bodymap2_testis | 4 .09 RPM | 39 .74 RPM |
bodymap2_thyroid | 0 .00 RPM | 38 .64 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .12 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014550 | 1 retrocopy | |
Homo sapiens | ENSG00000006042 | 2 retrocopies |
retro_hsap_1421, retro_hsap_3605 ,
|
Gorilla gorilla | ENSGGOG00000013333 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000001191 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022356 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006038 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000008166 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000008993 | 3 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |