RetrogeneDB ID: | retro_nleu_1233 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397285.1:21029203..21029882(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000006916 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM98 | ||
Ensembl ID: | ENSNLEG00000006038 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.59 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRDLLQRYDSKPIVDLIGAMETQSEPSELELDDVVIT |
METVVIVAIGVLATIFLASFAAL.LVCRQRYCRPRDLL.RYDSKPIV.LIGAMETQSEPSE.ELDDVVIT | |
Retrocopy | METVVIVAIGVLATIFLASFAALMLVCRQRYCRPRDLL*RYDSKPIVGLIGAMETQSEPSE*ELDDVVIT |
Parental | NPHIEAILENEDWIEDASGLMSHCIAILKICHTLTEKLVAMTMGS-GAKMKTSASVSDIIVVAKRISPRV |
NP.IEAILENEDWIEDASGLMSHCIAILKICHTLTEKLVAMT.GS.GAKMKTSASVSDIIVVAKRISPRV | |
Retrocopy | NPRIEAILENEDWIEDASGLMSHCIAILKICHTLTEKLVAMTVGS>GAKMKTSASVSDIIVVAKRISPRV |
Parental | DDVVKSMYPPLDPKLLDARTTALLLSVSHLVLVTRNACHLTGGLDWIDQSLSAAEEHLEVLREAALASEP |
DDVVKSMYPPLD.KLLDARTTALLLSVSHLVLVTRNACHLT.GLDWIDQSLSAAEEHLE.LREAALASEP | |
Retrocopy | DDVVKSMYPPLDRKLLDARTTALLLSVSHLVLVTRNACHLTRGLDWIDQSLSAAEEHLEALREAALASEP |
Parental | DKGLPGPEGFLQEQSAI |
DKGLPGPEGFLQEQSAI | |
Retrocopy | DKGLPGPEGFLQEQSAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014550 | 1 retrocopy | |
Homo sapiens | ENSG00000006042 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000013333 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000001191 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022356 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006038 | 3 retrocopies |
retro_nleu_1233 , retro_nleu_1840, retro_nleu_2635,
|
Pongo abelii | ENSPPYG00000008166 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000008993 | 3 retrocopies |