RetrogeneDB ID: | retro_pabe_1175 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:59474518..59475196(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM98 | ||
Ensembl ID: | ENSPPYG00000008166 | ||
Aliases: | None | ||
Description: | transmembrane protein 98 [Source:HGNC Symbol;Acc:24529] |
Percent Identity: | 91.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRDLLQRYDSKPIVDLIGAMETQSEPSELELDDVVIT |
METVVIVAIGVLATIFLASFAALVLVCRQRY..P.DL.QRYDSKPIVDLIGAM.TQS.PSELELDDVVI. | |
Retrocopy | METVVIVAIGVLATIFLASFAALVLVCRQRYYQPQDLRQRYDSKPIVDLIGAMVTQSGPSELELDDVVII |
Parental | NPHIEAILENEDWIEDASGLMSHCIAILKICHTLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVD |
NPHIEAILEN.DWI.DASGLMSHCIAILKICHTLTEKLVAMTMGSGAKMKTSA.VSDIIVVAKR.SPRVD | |
Retrocopy | NPHIEAILENKDWIKDASGLMSHCIAILKICHTLTEKLVAMTMGSGAKMKTSAIVSDIIVVAKRNSPRVD |
Parental | DVVKSMYPPLDPKLLDARTTALLLSVSHLVLVTRNACHLSGGLDWIDQSLSAAEEHLEVLREAALASEPD |
DVVKSMYPPLDPKLLD..TTALLLSVSHLVLVTRNA.HL.GGL.WID.SLSAAEEHL.VL.EAALA.EPD | |
Retrocopy | DVVKSMYPPLDPKLLDTGTTALLLSVSHLVLVTRNAFHLTGGLEWIDRSLSAAEEHLKVL*EAALAFEPD |
Parental | KGLPGPEGFLQEQSAI |
KGLPGPEGFLQEQSAI | |
Retrocopy | KGLPGPEGFLQEQSAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1 .66 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .52 RPM |
SRP007412_heart | 0 .00 RPM | 1 .29 RPM |
SRP007412_kidney | 0 .13 RPM | 9 .15 RPM |
SRP007412_liver | 0 .03 RPM | 4 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1421 |
Pan troglodytes | retro_ptro_971 |
Gorilla gorilla | retro_ggor_1098 |
Macaca mulatta | retro_mmul_2256 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014550 | 1 retrocopy | |
Homo sapiens | ENSG00000006042 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000013333 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000001191 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022356 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006038 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000008166 | 2 retrocopies |
retro_pabe_1175 , retro_pabe_2961,
|
Pan troglodytes | ENSPTRG00000008993 | 3 retrocopies |