RetrogeneDB ID: | retro_mmul_1835 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:61155894..61156293(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM98 | ||
Ensembl ID: | ENSMMUG00000022356 | ||
Aliases: | None | ||
Description: | transmembrane protein 98 [Source:HGNC Symbol;Acc:24529] |
Percent Identity: | 75.19 % |
Parental protein coverage: | 64.88 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LVLVCRQRYCRPRDLLQRYDSKPIVDLIGAMETQSEPSELELDDVVITNPHIEAILENEDWIEDASGLMS |
LV.V..QRY..P.DLLQRYDSK.I..L.GAM.TQSE.SELELDDVVITNP.IE.IL.NEDWI.DA.GLM. | |
Retrocopy | LVVV*GQRYRWPGDLLQRYDSKSIMSLLGAMKTQSELSELELDDVVITNPGIEPILDNEDWI*DALGLMV |
Parental | HCIAILKICHTLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYPPLDPKLL |
HCIAILKICHT..EKLVAM.MGS.A..KTSA.VS.IIVVAK.I.PRV.DVVKS.YP.L..KLL | |
Retrocopy | HCIAILKICHTWREKLVAMPMGSEAEKKTSATVSNIIVVAKWIIPRVYDVVKSVYPLLGTKLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 2 .91 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 3 .81 RPM |
SRP007412_cerebellum | 0 .00 RPM | 2 .00 RPM |
SRP007412_heart | 0 .00 RPM | 5 .95 RPM |
SRP007412_kidney | 0 .00 RPM | 8 .69 RPM |
SRP007412_liver | 0 .00 RPM | 3 .72 RPM |
SRP007412_testis | 0 .00 RPM | 5 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014550 | 1 retrocopy | |
Homo sapiens | ENSG00000006042 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000013333 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000001191 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022356 | 2 retrocopies |
retro_mmul_1835 , retro_mmul_2256,
|
Nomascus leucogenys | ENSNLEG00000006038 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000008166 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000008993 | 3 retrocopies |