RetrogeneDB ID: retro_mluc_130

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429817:2293792..2294479(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028293
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000001191
• Aliases: None
• Description: None

Sequence

>retro_mluc_130
ATGGAGACGGTGGTGATCGTTGCCATAGGCGTGCTGGCCACCATCTTTCTGGCCTCATTCGCAGCCTTGGTGGTGGTTTG
CAGGCAGCGGTACTGCCGACCTCGACCCAGGGACCTGCTGCAGCGCTATGATTCCAAGCCCATTGTGGACCTCATCGGTG
CCATGGAGACCCAGTCTGAGCCCTCTGAGCTGGAACTAGACGACGTCGTCATCACCAACCCCCACATCGAGGCCATTCTG
GAGAATGAAGACTGGATCGAGGATGCCTCGGGTCTCATGTCCCACTGCATTGCCATCTTGAAGATCTGTCACACTCTGAC
AGAAAAACTTGTTGCCATGACGATGGGCTCAGGGGCCAAGATGAAGACTTCAGCCAGCGTCAGCGACATCATTGTGGTGG
CCAAGCGGATCAGCCCCAGAGTGGACGATGTTGTGAAATCGATGTACCCGCCGCTGGACCTGAAGCTCCTGGATGCACGG
ACAACGGCCCTGCTCCTGTCTGTCAGTCACCTGGTGCTGGTGACCAGGAATGCCTGCCACCTGACCGGGGGCCTGGATTG
GGTAGACCAGTCGCTGTCCGCTGCTGAGGAGCACTTGCAAGTCCTTCGAGAGGCGGCCTTGGCCTCTGAGCCAGAGAAAG
GCCTCCCAGGCCCTGAGGGCTTCCTGCAGGAGCAGTCGGCCATCTAG

Alignment

ORF - retro_mluc_130 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.56 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  METVVIVAIGVLATIFLASFAALVVVCRQRYCRPRPRDLLQRYDSKPIVDLIGAMETQSEPSELELDDVV
          METVVIVAIGVLATIFLASFAALVVVCRQRYCRPRPRDLLQRYDSKPIVDLIGAMETQSEPSELELDDVV
Retrocopy METVVIVAIGVLATIFLASFAALVVVCRQRYCRPRPRDLLQRYDSKPIVDLIGAMETQSEPSELELDDVV

Parental  ITNPHIEAILENEDWIEDASGLMSHCIAILKICHTLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPR
          ITNPHIEAILENEDWIEDASGLMSHCIAILKICHTLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPR
Retrocopy ITNPHIEAILENEDWIEDASGLMSHCIAILKICHTLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPR

Parental  VDDVVKSMYPPLDPKLLDARTTALLLSVSHLVLVTRNACHLTGGLDWVDQSLSAAEEHLQVLREAALASE
          VDDVVKSMYPPLD.KLLDARTTALLLSVSHLVLVTRNACHLTGGLDWVDQSLSAAEEHLQVLREAALASE
Retrocopy VDDVVKSMYPPLDLKLLDARTTALLLSVSHLVLVTRNACHLTGGLDWVDQSLSAAEEHLQVLREAALASE

Parental  PEKGLPGPEGFLQEQSAI
          PEKGLPGPEGFLQEQSAI
Retrocopy PEKGLPGPEGFLQEQSAI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_130 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000014550	1 retrocopy	retro_cjac_2447,
Homo sapiens	ENSG00000006042	2 retrocopies	retro_hsap_1421, retro_hsap_3605,
Gorilla gorilla	ENSGGOG00000013333	2 retrocopies	retro_ggor_1098, retro_ggor_2432,
Myotis lucifugus	ENSMLUG00000001191	1 retrocopy	retro_mluc_130 ,
Macaca mulatta	ENSMMUG00000022356	2 retrocopies	retro_mmul_1835, retro_mmul_2256,
Nomascus leucogenys	ENSNLEG00000006038	3 retrocopies	retro_nleu_1233, retro_nleu_1840, retro_nleu_2635,
Pongo abelii	ENSPPYG00000008166	2 retrocopies	retro_pabe_1175, retro_pabe_2961,
Pan troglodytes	ENSPTRG00000008993	3 retrocopies	retro_ptro_2436, retro_ptro_2990, retro_ptro_971,