RetrogeneDB ID: | retro_mmul_2256 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:121827491..121828102(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000013311 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM98 | ||
Ensembl ID: | ENSMMUG00000022356 | ||
Aliases: | None | ||
Description: | transmembrane protein 98 [Source:HGNC Symbol;Acc:24529] |
Percent Identity: | 88.89 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | LVLVCRQRYCRPRDL-LQRYDSKPIVDLIGAMETQSEPSELELDDVVITNPHIEAILENEDWIEDASGLM |
LVL.CRQRY..PRDL.LQRYDSKPI.DLIGAM.TQSEPSELELDDVVITNPHIE.ILEN.DWI.DASGLM | |
Retrocopy | LVLDCRQRYYQPRDL<LQRYDSKPIMDLIGAMVTQSEPSELELDDVVITNPHIETILENKDWIKDASGLM |
Parental | SHCIAILKICHTLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYPPLDPKLLDARTTA |
SHCIAILKICHTLTE.LVA.TMGSGAKMKTSA.VS.IIV.AK..SPRVDDVVKSMYPPLDPKLLDA..TA | |
Retrocopy | SHCIAILKICHTLTEELVAITMGSGAKMKTSAIVSNIIVAAKWNSPRVDDVVKSMYPPLDPKLLDAGMTA |
Parental | LLLS-VSHLVLVTRNACHLTGG-LDWIDQSLSAAEEHLEVLREAALASEPDKGLPGPEGFLQEQSAI |
LLLS.VSHLVLVTRNACHLTG..LDWIDQSLSAAEEHL.VLREAALA.EPDKGLPGPEGFLQEQSAI | |
Retrocopy | LLLS>VSHLVLVTRNACHLTGS<LDWIDQSLSAAEEHLKVLREAALAFEPDKGLPGPEGFLQEQSAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 2 .91 RPM |
SRP007412_brain_prefrontal_cortex | 0 .40 RPM | 3 .81 RPM |
SRP007412_cerebellum | 0 .13 RPM | 2 .00 RPM |
SRP007412_heart | 0 .47 RPM | 5 .95 RPM |
SRP007412_kidney | 0 .82 RPM | 8 .69 RPM |
SRP007412_liver | 0 .28 RPM | 3 .72 RPM |
SRP007412_testis | 1 .58 RPM | 5 .88 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1421 |
Pan troglodytes | retro_ptro_971 |
Gorilla gorilla | retro_ggor_1098 |
Pongo abelii | retro_pabe_1175 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014550 | 1 retrocopy | |
Homo sapiens | ENSG00000006042 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000013333 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000001191 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022356 | 2 retrocopies |
retro_mmul_1835, retro_mmul_2256 ,
|
Nomascus leucogenys | ENSNLEG00000006038 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000008166 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000008993 | 3 retrocopies |