RetrogeneDB ID: | retro_hsap_3637 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:102901141..102901944(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000219757 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TARDBP | ||
Ensembl ID: | ENSG00000120948 | ||
Aliases: | None | ||
Description: | TAR DNA binding protein [Source:HGNC Symbol;Acc:11571] |
Percent Identity: | 72.26 % |
Parental protein coverage: | 64.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVR-LVEGILHAPDAGWG |
.S..I.VT.D.N.EPIEIPSEDD.TVLL.TVT.QFPGACGL.YR.PVSQ...GV..LVEGILHAP.AGWG | |
Retrocopy | ISACIQVTRDKNYEPIEIPSEDDRTVLLPTVTVQFPGACGLPYRIPVSQVL-GVS>LVEGILHAPSAGWG |
Parental | NLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL |
NLVYVVNY..DN.RK...TD.S.A.KVKRAVQKTS.L.VLGLPWKTTEQDLKEYFSTFGE.LMVQVKKD. | |
Retrocopy | NLVYVVNYSVDNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDV |
Parental | KTGHSKGFGFVRFTEYETQVKV-MSQRHMIDGRWCDCKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDEL |
.TG.SKGFGFV.F..YETQVK..MSQ.H..D..WCDC..PNS.KQ...E.LRS.K.FVG.CTE.M..D.L | |
Retrocopy | RTGYSKGFGFVHFIKYETQVKE<MSQQHKTDR*WCDCTVPNS>KQTLNETLRSKKMFVGCCTEIMNSDKL |
Parental | REFFSQYGDVMDVFIPKPFRAFAFVT-FADDQIAQSLCGEDLIIKGISVHISNA-EPKHNSNRQ |
..FF.....V.DVFI.KPFR.FAF.T..ADD..AQSLCGEDLIIKGIS.HISNA...KHNSNRQ | |
Retrocopy | QQFFGHCREVIDVFISKPFRDFAFLT<IADD*LAQSLCGEDLIIKGISIHISNA<KCKHNSNRQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 140 .44 RPM |
bodymap2_adrenal | 0 .00 RPM | 161 .67 RPM |
bodymap2_brain | 0 .00 RPM | 115 .58 RPM |
bodymap2_breast | 0 .00 RPM | 131 .36 RPM |
bodymap2_colon | 0 .00 RPM | 207 .13 RPM |
bodymap2_heart | 0 .00 RPM | 83 .30 RPM |
bodymap2_kidney | 0 .00 RPM | 141 .14 RPM |
bodymap2_liver | 0 .00 RPM | 73 .13 RPM |
bodymap2_lung | 0 .00 RPM | 153 .29 RPM |
bodymap2_lymph_node | 0 .00 RPM | 173 .87 RPM |
bodymap2_ovary | 0 .00 RPM | 279 .34 RPM |
bodymap2_prostate | 0 .00 RPM | 144 .52 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 85 .23 RPM |
bodymap2_testis | 0 .00 RPM | 172 .17 RPM |
bodymap2_thyroid | 0 .00 RPM | 368 .55 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 125 .92 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2460 |
Macaca mulatta | retro_mmul_1847 |
Callithrix jacchus | retro_cjac_2457 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002381 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008531 | 1 retrocopy | |
Homo sapiens | ENSG00000120948 | 2 retrocopies |
retro_hsap_1209, retro_hsap_3637 ,
|
Macaca mulatta | ENSMMUG00000007456 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041459 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009512 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001894 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000136 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000023126 | 1 retrocopy | |
Drosophila melanogaster | FBgn0025790 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |