RetrogeneDB ID: | retro_mmus_1958 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:104820178..104820930(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083856 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tardbp | ||
Ensembl ID: | ENSMUSG00000041459 | ||
Aliases: | Tardbp, 1190002A23Rik, C85084, TDP-43, Tdp43 | ||
Description: | TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629] |
Percent Identity: | 89.84 % |
Parental protein coverage: | 86.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMD |
EIPSEDDGTVLLSTVTAQFPGACGL.Y.NPVSQCMRGV.LVEGILHAPDAGWGNLVYVVNYPKDNKRK.D | |
Retrocopy | EIPSEDDGTVLLSTVTAQFPGACGLCYWNPVSQCMRGVQLVEGILHAPDAGWGNLVYVVNYPKDNKRKID |
Parental | ETDASSAVKVKRAVQKTSDLIVLGL-PWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY |
ETDASSAVKVKRAVQK.SDLIVLGL.PWKTTEQ.LKDYFSTFGEVLMV.VKKDLKT.HS.GF.FVRFTEY | |
Retrocopy | ETDASSAVKVKRAVQKMSDLIVLGL<PWKTTEQVLKDYFSTFGEVLMVRVKKDLKTCHSEGFDFVRFTEY |
Parental | ETQVKVMSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP |
ETQV.VMSQRHMIDGR.CDCKLPNSKQSPDEPLRSRKVFVG.CTEDMTAE.L.Q.....GEVVDVFIPKP | |
Retrocopy | ETQVEVMSQRHMIDGRRCDCKLPNSKQSPDEPLRSRKVFVGGCTEDMTAEALLQY----GEVVDVFIPKP |
Parental | FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLE |
FR.FAFVTFADDKV.QSLCGEDLIIKG.SVHIS.AEPKHNSNRQ.E | |
Retrocopy | FRTFAFVTFADDKVVQSLCGEDLIIKGLSVHISSAEPKHNSNRQKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 146 .56 RPM |
SRP007412_cerebellum | 0 .09 RPM | 188 .10 RPM |
SRP007412_heart | 0 .06 RPM | 74 .34 RPM |
SRP007412_kidney | 0 .13 RPM | 141 .52 RPM |
SRP007412_liver | 0 .05 RPM | 73 .54 RPM |
SRP007412_testis | 0 .05 RPM | 99 .39 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002381 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008531 | 1 retrocopy | |
Homo sapiens | ENSG00000120948 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000007456 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041459 | 1 retrocopy |
retro_mmus_1958 ,
|
Nomascus leucogenys | ENSNLEG00000009512 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001894 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000136 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000023126 | 1 retrocopy | |
Drosophila melanogaster | FBgn0025790 | 1 retrocopy |