RetrogeneDB ID: | retro_ptro_2460 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 6:103415456..103416259(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TARDBP | ||
Ensembl ID: | ENSPTRG00000000136 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.53 % |
Parental protein coverage: | 64.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVR-LVEGILHAPDAGWG |
.S..I.VT.D.N.EPIEIPSEDD.TVLL..VT.QFPGACGL.YR.PVSQ...GV..LVEGILHAP.AGWG | |
Retrocopy | ISACIQVTRDKNYEPIEIPSEDDRTVLLPMVTVQFPGACGLPYRIPVSQVL-GVS>LVEGILHAPSAGWG |
Parental | NLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL |
NLVYVVNY..DN.RK...TD.S.A.KVKRAVQKTS.L.VLGLPWKTTEQDLKEYFSTFGE.LMVQVKKD. | |
Retrocopy | NLVYVVNYSVDNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDV |
Parental | KTGHSKGFGFVRFTEYETQVKV-MSQRHMIDGRWCDCKLPNS-KQSQDEPLRSRKVFVGRCTEDMTEDEL |
.TG.SKGFGFV.F..YETQVK..MSQ.H..D..WCDC..PNS.KQ...E.LRS.K.FVG.CTE.M..D.L | |
Retrocopy | RTGYSKGFGFVYFIKYETQVKE<MSQQHKTDR*WCDCTVPNS>KQTLNETLRSKKMFVGCCTEIMNSDKL |
Parental | REFFSQYGDVMDVFIPKPFRAFAFVT-FADDQIAQSLCGEDLIIKGISVHISNA-EPKHNSNRQ |
..FF.....V.DVFI.KPFR.FAF.T..ADD..AQSLCGEDLIIKGIS.HIS.A...KHNSNRQ | |
Retrocopy | QQFFGHCREVIDVFISKPFRDFAFLT<IADD*LAQSLCGEDLIIKGISIHISSA<KCKHNSNRQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 107 .44 RPM |
SRP007412_cerebellum | 0 .00 RPM | 197 .99 RPM |
SRP007412_heart | 0 .00 RPM | 100 .03 RPM |
SRP007412_kidney | 0 .00 RPM | 120 .64 RPM |
SRP007412_liver | 0 .00 RPM | 95 .62 RPM |
SRP007412_testis | 0 .00 RPM | 160 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3637 |
Macaca mulatta | retro_mmul_1847 |
Callithrix jacchus | retro_cjac_2457 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002381 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008531 | 1 retrocopy | |
Homo sapiens | ENSG00000120948 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000007456 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041459 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009512 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001894 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000136 | 2 retrocopies |
retro_ptro_2460 , retro_ptro_828,
|
Sus scrofa | ENSSSCG00000023126 | 1 retrocopy | |
Drosophila melanogaster | FBgn0025790 | 1 retrocopy |