Parental gene:

TARDBP, ENSG00000120948

Aliases:None
Description:TAR DNA binding protein [Source:HGNC Symbol;Acc:11571]
Organism:Human (Homo sapiens)
Coordinates:1:11072413..11085796(+)


>ENSG00000120948
ATGTCTGAATATATTCGGGTAACCGAAGATGAGAACGATGAGCCCATTGAAATACCATCGGAAGACGATGGGACGGTGCT
GCTCTCCACGGTTACAGCCCAGTTTCCAGGGGCGTGTGGGCTTCGCTACAGGAATCCAGTGTCTCAGTGTATGAGAGGTG
TCCGGCTGGTAGAAGGAATTCTGCATGCCCCAGATGCTGGCTGGGGAAATCTGGTGTATGTTGTCAACTATCCAAAAGAT
AACAAAAGAAAAATGGATGAGACAGATGCTTCATCAGCAGTGAAAGTGAAAAGAGCAGTCCAGAAAACATCCGATTTAAT
AGTGTTGGGTCTCCCATGGAAAACAACCGAACAGGACCTGAAAGAGTATTTTAGTACCTTTGGAGAAGTTCTTATGGTGC
AGGTCAAGAAAGATCTTAAGACTGGTCATTCAAAGGGGTTTGGCTTTGTTCGTTTTACGGAATATGAAACACAAGTGAAA
GTAATGTCACAGCGACATATGATAGATGGACGATGGTGTGACTGCAAACTTCCTAATTCTAAGCAAAGCCAAGATGAGCC
TTTGAGAAGCAGAAAAGTGTTTGTGGGGCGCTGTACAGAGGACATGACTGAGGATGAGCTGCGGGAGTTCTTCTCTCAGT
ACGGGGATGTGATGGATGTCTTCATCCCCAAGCCATTCAGGGCCTTTGCCTTTGTTACATTTGCAGATGATCAGATTGCG
CAGTCTCTTTGTGGAGAGGACTTGATCATTAAAGGAATCAGCGTTCATATATCCAATGCCGAACCTAAGCACAATAGCAA
TAGACAGTTAGAAAGAAGTGGAAGATTTGGTGGTAATCCAGGTGGCTTTGGGAATCAGGGTGGATTTGGTAATAGCAGAG
GGGGTGGAGCTGGTTTGGGAAACAATCAAGGTAGTAATATGGGTGGTGGGATGAACTTTGGTGCGTTCAGCATTAATCCA
GCCATGATGGCTGCCGCCCAGGCAGCACTACAGAGCAGTTGGGGTATGATGGGCATGTTAGCCAGCCAGCAGAACCAGTC
AGGCCCATCGGGTAATAACCAAAACCAAGGCAACATGCAGAGGGAGCCAAACCAGGCCTTCGGTTCTGGAAATAACTCTT
ATAGTGGCTCTAATTCTGGTGCAGCAATTGGTTGGGGATCAGCATCCAATGCAGGGTCGGGCAGTGGTTTTAATGGAGGC
TTTGGCTCAAGCATGGATTCTAAGTCTTCTGGCTGGGGAATGTAG

Library Parental gene expression (RPM)
bodymap2_adipose 140 .44 RPM
bodymap2_adrenal 161 .67 RPM
bodymap2_brain 115 .58 RPM
bodymap2_breast 131 .36 RPM
bodymap2_colon 207 .13 RPM
bodymap2_heart 83 .30 RPM
bodymap2_kidney 141 .14 RPM
bodymap2_liver 73 .13 RPM
bodymap2_lung 153 .29 RPM
bodymap2_lymph_node 173 .87 RPM
bodymap2_ovary 279 .34 RPM
bodymap2_prostate 144 .52 RPM
bodymap2_skeletal_muscle 85 .23 RPM
bodymap2_testis 172 .17 RPM
bodymap2_thyroid 368 .55 RPM
bodymap2_white_blood_cells 125 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002381 ortholog_one2one 2 retrogenes
retro_cjac_2457, retro_cjac_525,
Dasypus novemcinctus ENSDNOG00000008531 ortholog_one2one 1 retrogene
retro_dnov_2262,
Macaca mulatta ENSMMUG00000007456 ortholog_one2one 1 retrogene
retro_mmul_1847,
Mus musculus ENSMUSG00000041459 ortholog_one2one 1 retrogene
retro_mmus_1958,
Nomascus leucogenys ENSNLEG00000009512 possible_ortholog 2 retrogenes
retro_nleu_201, retro_nleu_819,
Pongo abelii ENSPPYG00000001894 ortholog_one2one 1 retrogene
retro_pabe_1008,
Pan troglodytes ENSPTRG00000000136 ortholog_one2one 2 retrogenes
retro_ptro_2460, retro_ptro_828,
Sus scrofa ENSSSCG00000023126 possible_ortholog 1 retrogene
retro_sscr_652,
Drosophila melanogaster FBgn0025790 possible_ortholog 1 retrogene
retro_dmel_17,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1209 86.08 65.46
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2. retro_hsap_3637 72.26 64.98
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Download FASTA sequences of all ENSG00000120948 retrocopies