RetrogeneDB ID: | retro_hsap_521 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:227598341..227599020(-) | ||
Located in intron of: | ENSG00000234277 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000232864 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUCKS1 | ||
Ensembl ID: | ENSG00000069275 | ||
Aliases: | NUCKS1, NUCKS | ||
Description: | nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:HGNC Symbol;Acc:29923] |
Percent Identity: | 63.45 % |
Parental protein coverage: | 95.88 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | MSRPVRNRKV-VDYSQFQESDDADEDYGRDSGPPT-KKIRSSPREAKNKRRSGKNSQEDSEDSEDKDVKT |
MSR..R.RKV.VDYSQFQES.DA.EDYGRDSGP.T..K....P...K..R.SGKNSQEDSEDSE.KD.KT | |
Retrocopy | MSRFFRTRKV>VDYSQFQESGDANEDYGRDSGPIT>RKFHHLP*KLKI-RQSGKNSQEDSEDSEEKDLKT |
Parental | KKDDSHSAEDSEDEKEDHKNVRQQRQ-AASKAASKQREMLMEDV-GSEEEQEEEDEAPFQEKDSGSDEDF |
KKDD.H.A...ED...........RQ..A....S.....LMEDV.G.EEEQEE.DE.PFQE..S.S.EDF | |
Retrocopy | KKDDFH*A---EDNEDENEDDKNVRQ>TAGSI*SSFQTELMEDV<GHEEEQEE-DETPFQE-NSSSNEDF |
Parental | LMEDDDDSDYGSSKKKNKKMVKKSKPERKEKKMPKPRLKATVTPSPVKGKGKVGRPTASKASKEKTPSPK |
LMEDDD.SDYG.....................M.KPRLKATVTPSPVKGKG.VGRPTASK.SKEK..SPK | |
Retrocopy | LMEDDDNSDYGNXXXXXXXXXXXXXXXXXXXXMSKPRLKATVTPSPVKGKGNVGRPTASKPSKEKITSPK |
Parental | EEDEEPESPPEKKTSTS-PPPEKSGDEG |
.EDE.PESPPEKKTSTS.PPP.KSGDEG | |
Retrocopy | -EDEVPESPPEKKTSTS<PPPKKSGDEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 342 .97 RPM |
bodymap2_adrenal | 0 .00 RPM | 267 .11 RPM |
bodymap2_brain | 0 .00 RPM | 485 .80 RPM |
bodymap2_breast | 0 .00 RPM | 299 .17 RPM |
bodymap2_colon | 0 .00 RPM | 266 .45 RPM |
bodymap2_heart | 0 .00 RPM | 314 .63 RPM |
bodymap2_kidney | 0 .00 RPM | 190 .96 RPM |
bodymap2_liver | 0 .00 RPM | 115 .27 RPM |
bodymap2_lung | 0 .00 RPM | 270 .36 RPM |
bodymap2_lymph_node | 0 .00 RPM | 147 .94 RPM |
bodymap2_ovary | 0 .00 RPM | 517 .81 RPM |
bodymap2_prostate | 0 .00 RPM | 284 .93 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 135 .75 RPM |
bodymap2_testis | 0 .06 RPM | 268 .83 RPM |
bodymap2_thyroid | 0 .00 RPM | 400 .56 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 170 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_389 |
Gorilla gorilla | retro_ggor_480 |
Macaca mulatta | retro_mmul_422 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012950 | 1 retrocopy | |
Bos taurus | ENSBTAG00000008001 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000001855 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017212 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000003183 | 1 retrocopy | |
Homo sapiens | ENSG00000069275 | 1 retrocopy |
retro_hsap_521 ,
|
Gorilla gorilla | ENSGGOG00000026655 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007829 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005645 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001832 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014564 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001904 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000047287 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000015641 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000910 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003751 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |