RetrogeneDB ID: | retro_nleu_2576 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397374.1:3332654..3333082(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUCKS1 | ||
Ensembl ID: | ENSNLEG00000014564 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.08 % |
Parental protein coverage: | 60.91 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | VSSFYRNRKV-VDYSQFQESDDADEDYGRDSGP-PTKKIRSSPREAKNKRRSGKNSQEDSEDSEDKDVKT |
.S...RNRKV.VDYSQFQESDDADEDYGRDSGP.P..K....P...K..R.SGKNSQEDSEDSE.KD.KT | |
Retrocopy | MS*LFRNRKV>VDYSQFQESDDADEDYGRDSGP>PLRKFDHLP*KLKI-RQSGKNSQEDSEDSEEKDLKT |
Parental | KKDDSHSAEDSEDEKEDHKNVRQQ-RQAASKAASKQREMLMEDVG-SEEEQEEEDEAPFQEKDSGSDEDF |
KKDD.HSAED.EDE.EDHKNV.Q...QAASKAASKQ....M...G...EE.E....APFQE..S.S.EDF | |
Retrocopy | KKDDFHSAEDNEDENEDHKNVCQH<QQAASKAASKQSSWKMWA*G>EQEEDE----APFQE-NSSSNEDF |
Parental | LMEDDDDSDYGS |
LMEDDDDSDYG. | |
Retrocopy | LMEDDDDSDYGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012950 | 1 retrocopy | |
Bos taurus | ENSBTAG00000008001 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000001855 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017212 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000003183 | 1 retrocopy | |
Homo sapiens | ENSG00000069275 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026655 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007829 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005645 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001832 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014564 | 1 retrocopy |
retro_nleu_2576 ,
|
Pan troglodytes | ENSPTRG00000001904 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000047287 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000015641 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000910 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003751 | 1 retrocopy |