RetrogeneDB ID: | retro_rnor_2337 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:152451085..152451529(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000048038 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nucks1 | ||
Ensembl ID: | ENSRNOG00000047287 | ||
Aliases: | Nucks1, Nucks | ||
Description: | Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9EPJ0] |
Percent Identity: | 96.62 % |
Parental protein coverage: | 60.91 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSRPVRNRKVVDYSQFQESDDADEDYGRDSGPPAKKIRSSPREAKNKRRSGKNSQEDSEDSEEKDVKTKK |
MSRPVRNRKVVDYSQFQESDDA..DYGRDSGPPAKKIRSSPRE.KNKRRSGKNSQEDSEDSEEKDVK.KK | |
Retrocopy | MSRPVRNRKVVDYSQFQESDDAEGDYGRDSGPPAKKIRSSPRETKNKRRSGKNSQEDSEDSEEKDVKSKK |
Parental | DDSHSAEDSEDEKDDHKSVRQQRQAASKAASKQREMLLEDVGSEEEPEEDDEAPFQEKDSGSDEDFLMED |
DDSHSAEDSEDEKDDHKSVRQQRQAASKAASKQREMLLEDVGSEEEPEEDDEA.FQEKDSGSDEDFLMED | |
Retrocopy | DDSHSAEDSEDEKDDHKSVRQQRQAASKAASKQREMLLEDVGSEEEPEEDDEASFQEKDSGSDEDFLMED |
Parental | DDDSDYGS |
DDDSDYGS | |
Retrocopy | DDDSDYGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 35 .30 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .87 RPM |
SRP017611_liver | 0 .00 RPM | 13 .25 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012950 | 1 retrocopy | |
Bos taurus | ENSBTAG00000008001 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000001855 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017212 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000003183 | 1 retrocopy | |
Homo sapiens | ENSG00000069275 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026655 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007829 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005645 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001832 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014564 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001904 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000047287 | 2 retrocopies |
retro_rnor_2337 , retro_rnor_2338,
|
Tupaia belangeri | ENSTBEG00000015641 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000910 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003751 | 1 retrocopy |