RetrogeneDB ID: | retro_tsyr_987 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_263536:1..672(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUCKS1 | ||
Ensembl ID: | ENSTSYG00000000910 | ||
Aliases: | None | ||
Description: | nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:HGNC Symbol;Acc:29923] |
Percent Identity: | 88.89 % |
Parental protein coverage: | 94.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DDADEDYGKRSG-PTKKIRSSPREAKNKRRSGKNSQEDSEDSEEKDVKTKKDDSHSAEDSEDEKEDHKNV |
DDADEDYG..SG.PTKKIRSSPREAKNKRRSGKNSQEDSEDSEEKDVKTKKDDSHSAEDSEDEKEDHKNV | |
Retrocopy | DDADEDYGRDSGPPTKKIRSSPREAKNKRRSGKNSQEDSEDSEEKDVKTKKDDSHSAEDSEDEKEDHKNV |
Parental | RQQRQAASKAASKQREMLMEDVGSEEEQEEEDEAPFQEKDSGSDEDFLMEDDDDSDYGSSKKKNKKMVKK |
RQQRQAASKAASKQREMLMEDVGSEEEQEEEDEAPFQEKDSGSDEDFL.EDDDDSDYGS........... | |
Retrocopy | RQQRQAASKAASKQREMLMEDVGSEEEQEEEDEAPFQEKDSGSDEDFLTEDDDDSDYGSXXXXXXXXXXX |
Parental | SKPERKEKKMPKPRLKATVMPSPVKGKGKVGR-PTASKASKEKTPSPKEEDEEPESPPEKKTSASPPPEK |
.........MPKPRLKATVMPSPVKGKGKVGR.PTASKASKEKTPSPKEEDEEPESPPEKKTSASPPPEK | |
Retrocopy | XXXXXXXXXMPKPRLKATVMPSPVKGKGKVGR<PTASKASKEKTPSPKEEDEEPESPPEKKTSASPPPEK |
Parental | SGDEGSEDEAQSGED |
SGDEGSEDEAQSGED | |
Retrocopy | SGDEGSEDEAQSGED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012950 | 1 retrocopy | |
Bos taurus | ENSBTAG00000008001 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000001855 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017212 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000003183 | 1 retrocopy | |
Homo sapiens | ENSG00000069275 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026655 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007829 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005645 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001832 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014564 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001904 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000047287 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000015641 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000910 | 1 retrocopy |
retro_tsyr_987 ,
|
Vicugna pacos | ENSVPAG00000003751 | 1 retrocopy |