RetrogeneDB ID: | retro_ecab_59 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 29:28371631..28372081(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000006393 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM2 | ||
Ensembl ID: | ENSECAG00000008396 | ||
Aliases: | CALM2, CALM | ||
Description: | calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445] |
Percent Identity: | 78.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
MAD.LTEEQ.A.F.EAF.LFDKDGDG.ITT.ELGTVMRSLGQ.PTEAELQ.M...VD.DGN.T.DFPEFL | |
Retrocopy | MADELTEEQVAVFREAFALFDKDGDGIITTQELGTVMRSLGQSPTEAELQGMVSKVDHDGNRTVDFPEFL |
Parental | TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE |
.MMA.KMKD.DSEEEIREAFR.FDKDGNG.IS.AELRH..T.LGEKLT.EEVD.MIR.AD.DGDGQVNYE | |
Retrocopy | DMMAKKMKDRDSEEEIREAFRMFDKDGNGFISTAELRHMTTRLGEKLTKEEVDKMIRAADVDGDGQVNYE |
Parental | EFVQMMTAK |
EFV.M...K | |
Retrocopy | EFVRMLVPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 58 .97 RPM |
SRP021940_cerebellum | 0 .05 RPM | 119 .86 RPM |
SRP021940_embryo | 0 .00 RPM | 121 .88 RPM |
SRP021940_placental_villous | 0 .10 RPM | 113 .40 RPM |
SRP021940_synovial_membrane | 0 .41 RPM | 53 .48 RPM |
SRP021940_testis | 0 .00 RPM | 92 .72 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_59 |
Pan troglodytes | retro_ptro_83 |
Gorilla gorilla | retro_ggor_187 |
Pongo abelii | retro_pabe_45 |
Mus musculus | retro_mmus_50 |
Rattus norvegicus | retro_rnor_318 |