RetrogeneDB ID: | retro_hsap_804 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:85645779..85646693(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000254479 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A1 | ||
Ensembl ID: | ENSG00000100075 | ||
Aliases: | SLC25A1, CTP, D2L2AD, SEA, SLC20A3 | ||
Description: | solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 [Source:HGNC Symbol;Acc:10979] |
Percent Identity: | 84.74 % |
Parental protein coverage: | 98.07 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | APRAPRALAAAAPASGKAKLTHPGKAILAGGLAGGIEICITFPTEYVKTQLQLDERSHPPRYRGIGDCVR |
APRAP.ALAAAAPASGKAKLTH.GKAILAGGLAGGIEI.ITFPT.YVKTQ.QLD..S.PPRY..IG..V. | |
Retrocopy | APRAPHALAAAAPASGKAKLTHLGKAILAGGLAGGIEIYITFPTQYVKTQWQLD*PSNPPRYQSIGEWVW |
Parental | QTVRSHGVLGLYRGLSSLLYGSIPKAAVRFGMFEFLSNHMRDAQGRLDSTRGLLCGLGAGVAEAVVVVCP |
QTVRSHGVLGLYR.LSSLLYGSIPKAA..FGMF.FL.NH.RD.QGRLDSTRGLLC.LGAGVAEAVV.VCP | |
Retrocopy | QTVRSHGVLGLYRSLSSLLYGSIPKAAASFGMF*FLGNHLRDSQGRLDSTRGLLCCLGAGVAEAVVIVCP |
Parental | METIKVKFIHDQTSPNPKYRGFFHG-VREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMT-SLRNWYR |
METIKV.FIHDQTSPNPKYRGFF.G.VR.IVREQGLKG.YQ.LTATVLKQG.NQAIRFFVMT.SL.NWYR | |
Retrocopy | METIKVRFIHDQTSPNPKYRGFFYG<VRKIVREQGLKGMYQSLTATVLKQGWNQAIRFFVMT>SLHNWYR |
Parental | GDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILKKEGLKAFYKGTV |
GDNPNKPMNPLITG.FGAI...ASVFGNTPLDVIKTR..GLEAHKYRN..DCG.QIL.KE.LKAFYKG.V | |
Retrocopy | GDNPNKPMNPLITGGFGAIVCTASVFGNTPLDVIKTRR*GLEAHKYRNLMDCGWQILRKEELKAFYKGIV |
Parental | PR-LGRVCLDVAIVFVIYDEVVKLLNKV |
PR.LG.V.LDVAIVF.IYDEVVKLLNKV | |
Retrocopy | PR<LGQVNLDVAIVFIIYDEVVKLLNKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .02 RPM | 54 .49 RPM |
bodymap2_adrenal | 0 .02 RPM | 30 .62 RPM |
bodymap2_brain | 0 .02 RPM | 12 .59 RPM |
bodymap2_breast | 0 .04 RPM | 92 .04 RPM |
bodymap2_colon | 0 .00 RPM | 30 .92 RPM |
bodymap2_heart | 0 .00 RPM | 7 .86 RPM |
bodymap2_kidney | 0 .00 RPM | 38 .76 RPM |
bodymap2_liver | 0 .00 RPM | 53 .46 RPM |
bodymap2_lung | 0 .00 RPM | 30 .10 RPM |
bodymap2_lymph_node | 0 .00 RPM | 34 .52 RPM |
bodymap2_ovary | 0 .00 RPM | 39 .59 RPM |
bodymap2_prostate | 0 .00 RPM | 44 .63 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 7 .37 RPM |
bodymap2_testis | 0 .06 RPM | 38 .18 RPM |
bodymap2_thyroid | 0 .04 RPM | 31 .71 RPM |
bodymap2_white_blood_cells | 0 .02 RPM | 20 .99 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_560 |
Gorilla gorilla | retro_ggor_661 |
Pongo abelii | retro_pabe_719 |
Macaca mulatta | retro_mmul_1077 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000100075 | 2 retrocopies |
retro_hsap_1632, retro_hsap_804 ,
|
Gorilla gorilla | ENSGGOG00000006198 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005431 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005215 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000011649 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029785 | 9 retrocopies | |
Pan troglodytes | ENSPTRG00000014057 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000006845 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .09 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .06 RPM |
FIN_HG00375 | 0 .05 RPM |
FIN_HG00377 | 0 .05 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .06 RPM |
GBR_HG00143 | 0 .06 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .10 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .07 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |