RetrogeneDB ID: | retro_mmul_1077 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:84262657..84263582(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A1 | ||
Ensembl ID: | ENSMMUG00000005431 | ||
Aliases: | None | ||
Description: | tricarboxylate transport protein, mitochondrial [Source:RefSeq peptide;Acc:NP_001253635] |
Percent Identity: | 77.04 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 7 |
Parental | MAAPRAPRALAAAAPASGKAKLTHPGKAILAGGLAGGIEICITFPTEYVKTQ-LQLDERSHPPRYRGIGD |
MAAPR.PRALAAAAPASGK.KLT..GKAILAGGLAG.IEI.ITFPT.YVKTQ..QLD.RSHP.RY..I.D | |
Retrocopy | MAAPRTPRALAAAAPASGKIKLTLLGKAILAGGLAGSIEIYITFPTQYVKTQ<GQLD*RSHPLRYQSIRD |
Parental | -CVRQTVRSHGVLGLYRGLSSLLYGSIPKAAVRFGMFEFLSNHMRDAQGR-LDSTRGLLCGLGAGVAEAV |
..V...V..HGVLGLYRGLSSLLYGSIPK.A.RFGMF.FLSNHMR..QGR.LDSTRGLLC.LGAGVAEAV | |
Retrocopy | <PVWSSVCNHGVLGLYRGLSSLLYGSIPKVAARFGMFWFLSNHMRVSQGR<LDSTRGLLCCLGAGVAEAV |
Parental | VVVCPMETIKVKFIHDQTSPNPKYRGFFHG-VREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMT-SL |
V..CPM.TI.VKF....T..NP.YRGFF.G.VR.IVR.QGLKG.YQGLT.TVLKQG.NQAI.FFVMT.SL | |
Retrocopy | VIMCPMKTINVKFSR-HTYLNPQYRGFFRG<VRKIVR*QGLKGMYQGLTVTVLKQGWNQAICFFVMT>SL |
Parental | RNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRKEGLK-A |
..WY.GDNPNKPMN.LITGVFGA....ASVFGNTPLDVIKTR..GLEAHKYRN..DC..QILRKE.LK.. | |
Retrocopy | HSWYGGDNPNKPMNVLITGVFGAMVCTASVFGNTPLDVIKTRR*GLEAHKYRNSMDCLWQILRKEELK<G |
Parental | FYKGTV-PRLGRVCLDVAIVFIIYDEVVKLLNKVWKTD |
FYKG.V.P..G.V.L.VAIVFIIYDEVVKLLN.VWKTD | |
Retrocopy | FYKGIV<PAPGQVSLVVAIVFIIYDEVVKLLNEVWKTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 9 .64 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 28 .72 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .75 RPM |
SRP007412_heart | 0 .00 RPM | 15 .43 RPM |
SRP007412_kidney | 0 .00 RPM | 170 .89 RPM |
SRP007412_liver | 0 .00 RPM | 328 .07 RPM |
SRP007412_testis | 3 .24 RPM | 32 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_804 |
Pan troglodytes | retro_ptro_560 |
Gorilla gorilla | retro_ggor_661 |
Pongo abelii | retro_pabe_719 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000100075 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000006198 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005431 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005215 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000011649 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029785 | 9 retrocopies | |
Pan troglodytes | ENSPTRG00000014057 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000006845 | 1 retrocopy |