RetrogeneDB ID: | retro_mmul_485 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:43978995..43979902(-) | ||
Located in intron of: | ENSMMUG00000017104 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A1 | ||
Ensembl ID: | ENSMMUG00000005431 | ||
Aliases: | None | ||
Description: | tricarboxylate transport protein, mitochondrial [Source:RefSeq peptide;Acc:NP_001253635] |
Percent Identity: | 80.13 % |
Parental protein coverage: | 97.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | RALAAAAPASGKAKLTHPGKAILAGGLAGGIEICITFPT-EYVKTQLQLDERSHPPRYRGIGDCVRQTVR |
RAL.A..P.SGKAKLTHPG.AILA.GLAGGI.ICITFPT..YVKTQL.LDE..H.P.YRG.GDCV.Q.V. | |
Retrocopy | RALVAPEPVSGKAKLTHPGEAILAVGLAGGIDICITFPT<QYVKTQLHLDEHLHLPQYRGTGDCVQQMVH |
Parental | SHGVLGLYRGLSSLLYGSIPKAAVRFGMFEFLSNHMRDAQGRLDSTRGLLCGLGAGVAE-AVVVVCPMET |
SHG.LGLY.GLSS.L..SIPKAAVRFGMF.FLSNHM.DAQG.LDST..LLCG.GA..A..A..VVCP.ET | |
Retrocopy | SHGALGLYCGLSSHLCSSIPKAAVRFGMFAFLSNHMQDAQGQLDSTHELLCGPGASMAR>AMEVVCPTET |
Parental | IKVKFIHDQTSPNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTSLRNWYRGDNPN |
IKVKF.H.QTSPNPKY.GFFH.VREIV.EQGLKGTYQ.LTAT.LKQGSNQAI.FFVM.SL.NWYRG.N.N | |
Retrocopy | IKVKFNHNQTSPNPKYTGFFHAVREIVWEQGLKGTYQDLTATMLKQGSNQAICFFVMISLCNWYRGNNLN |
Parental | KPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRKE-GLKAFYKGTVPR-L |
KPMN.LITGVF.AI.GAASVFGNTPLDVIKT.MQGLE.HKY.NTWDC.LQILRKE.GLKAFYKGTVP..L | |
Retrocopy | KPMNLLITGVFRAIVGAASVFGNTPLDVIKTQMQGLEVHKYWNTWDCVLQILRKE<GLKAFYKGTVPA<L |
Parental | GRVCLDVAIVFIIYDEVVKLLNKVWKT |
G.V.L.VAIVFIIYDEVVKLLNKVWKT | |
Retrocopy | GWVVLNVAIVFIIYDEVVKLLNKVWKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 9 .64 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 28 .72 RPM |
SRP007412_cerebellum | 0 .13 RPM | 11 .75 RPM |
SRP007412_heart | 0 .24 RPM | 15 .43 RPM |
SRP007412_kidney | 0 .59 RPM | 170 .89 RPM |
SRP007412_liver | 0 .08 RPM | 328 .07 RPM |
SRP007412_testis | 0 .11 RPM | 32 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_334 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000100075 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000006198 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005431 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005215 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000011649 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029785 | 9 retrocopies | |
Pan troglodytes | ENSPTRG00000014057 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000006845 | 1 retrocopy |