RetrogeneDB ID: | retro_mmul_1683 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:61429385..61430080(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A1 | ||
Ensembl ID: | ENSMMUG00000005431 | ||
Aliases: | None | ||
Description: | tricarboxylate transport protein, mitochondrial [Source:RefSeq peptide;Acc:NP_001253635] |
Percent Identity: | 61.94 % |
Parental protein coverage: | 77.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 7 |
Parental | RQTVRSHGVLGLYRGLSSLLYGSIPKAAVR-FGMFEFLSNHMRDAQGRLDSTRG-LLCGLGAGVAEAVVV |
R...RSHGV.G..R.L.SLL..SIPKAA...F.M..FLS...R.AQGRL.S..G.L.C..GAGVAEAVVV | |
Retrocopy | RAHCRSHGVPGMHRRLGSLLCCSIPKAALG<FRMSQFLSSQRREAQGRLYSSAG<LRCRWGAGVAEAVVV |
Parental | VCPMETIKVKFIHDQTSPNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFF-VMTSLRNW |
VCPM.TIKVK.IH.QT.P....RG..H.VRE.....G.KG...GL.A...KQG.NQA.R.F...T.L..W | |
Retrocopy | VCPMDTIKVKIIHGQTPPDLQCRGVSHRVREMC---GNKGNSPGLPAQ--KQGWNQAVRLF<LLTPLHSW |
Parental | YRGDN-PNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHK-YRNTWDC-GLQILRK-EGLKA |
YRGDN.P.KPMN.L..G.FGAI.GAASV.GN.P...IKTRM.GLE.HK...NT.DC..LQILRK.EGLKA | |
Retrocopy | YRGDN<PSKPMNWLVAGAFGAIVGAASVLGNAPMHGIKTRMRGLEKHK<TLNTRDC<PLQILRK<EGLKA |
Parental | FYKGTVPRLGRVCLDVAIVFIIYDEVVKLLNKVWKTD |
FY.GTVPRLGRVCLD...VFI...E.V.....VWKTD | |
Retrocopy | FYDGTVPRLGRVCLDMTTVFILCHE-VESCSTVWKTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 9 .64 RPM |
SRP007412_brain_prefrontal_cortex | 0 .56 RPM | 28 .72 RPM |
SRP007412_cerebellum | 0 .39 RPM | 11 .75 RPM |
SRP007412_heart | 0 .00 RPM | 15 .43 RPM |
SRP007412_kidney | 0 .00 RPM | 170 .89 RPM |
SRP007412_liver | 0 .00 RPM | 328 .07 RPM |
SRP007412_testis | 0 .08 RPM | 32 .94 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000100075 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000006198 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005431 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005215 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000011649 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029785 | 9 retrocopies | |
Pan troglodytes | ENSPTRG00000014057 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000006845 | 1 retrocopy |