RetrogeneDB ID: | retro_itri_1250 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393414.1:7911..8190(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000025569 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSSTOG00000002832 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 95.7 % |
Parental protein coverage: | 73.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | APVKKLVAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKIT |
APVKKLV.KGG...KQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKIT | |
Retrocopy | APVKKLVVKGGXXXKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKIT |
Parental | VTSEVPFSKRYLKYLTKKYLKKN |
VTSEVPFSKRYLKYLTKKYLKKN | |
Retrocopy | VTSEVPFSKRYLKYLTKKYLKKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |