RetrogeneDB ID: | retro_itri_1326 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393441.1:2594815..2595113(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSSTOG00000002832 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 72.28 % |
Parental protein coverage: | 78.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLG-GGVVTIERSKSKITVTSEVPFSKRYLKYLT |
LKF.LD..HP....I.DAANFE.FLQERIK.N.KAGNLG.GGVVTI.R.KSKIT.TSEV.F.K.YLKYL. | |
Retrocopy | LKFHLDWYHPIQQDIVDAANFEEFLQERIKQNRKAGNLG>GGVVTIQRRKSKITITSEVIF*KIYLKYLS |
Parental | KKYLKKNNLRDWLRVVANSKESYELRYFQIN |
KKYL.KNNL.D.L.VVA..KESY.L.Y.QIN | |
Retrocopy | KKYL-KNNLHD*LHVVASNKESYTLCYLQIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |