RetrogeneDB ID:

retro_tsyr_242

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:GeneScaffold_6098:140986..141260(-)
Located in intron of:ENSTSYG00000013029
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL22
Ensembl ID:ENSTSYG00000003649
Aliases:None
Description:ribosomal protein L22 [Source:HGNC Symbol;Acc:10315]


Retrocopy-Parental alignment summary:






>retro_tsyr_242
GGTGCCCTTGCAAAAGCTTGTGGCAAAGGGGGGCAAAAACAAAACCAAGTTCTGAAGTTTACCCTTGACTGCATCCACTT
TGTAAAAAGTGGAATCGTGGATGCTGCCAATTTTGACCAGTTTCTCCAAGAGATAATTAAAGTGAATGGAAAAGCTGGGA
ATCTCAGTGGAGGCCCTGTAACCATTGAAGGAGGCCAAGAACAAGATGACTGTAACTTCTGAGGTGCCTTTTTCCAAAAA
GTATTTGAACTGTATTGCTAAAATATATTTGAAA

ORF - retro_tsyr_242 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.57 %
Parental protein coverage: 70.54 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalGAVKKLVAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIE-RSKSKI
GA..K...KGG.K..QVLKFTLDC.H.V..GI.DAANF.QFLQE.IKVNGKAGNL.GG.VTIE...K.K.
RetrocopyGALAKACGKGGQKQNQVLKFTLDCIHFVKSGIVDAANFDQFLQEIIKVNGKAGNLSGGPVTIE>EAKNKM
ParentalTVTSEVPFSKRYLKYLTKKYLK
TVTSEVPFSK.YL....K.YLK
RetrocopyTVTSEVPFSKKYLNCIAKIYLK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_242 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 92 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000098647 retrocopies
Bos taurus ENSBTAG000000144234 retrocopies
Cavia porcellus ENSCPOG000000201392 retrocopies
Gorilla gorilla ENSGGOG0000002773910 retrocopies
Macaca mulatta ENSMMUG0000001834712 retrocopies
Mustela putorius furoENSMPUG000000070876 retrocopies
Pongo abelii ENSPPYG0000000195111 retrocopies
Sus scrofa ENSSSCG000000033674 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000028324 retrocopies
Tarsius syrichta ENSTSYG00000003649 32 retrocopies



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