RetrogeneDB ID: | retro_itri_407 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393289.1:14822220..14822495(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSSTOG00000002832 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 82.8 % |
Parental protein coverage: | 72.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | APVKKLVAKGGKK-KKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKI |
AP.KKLVAKGG.K..KQ.LKFTLDCT.PVEDGIM...NFEQFLQERIK.NGKAGNLG.G.VTI.RSKSKI | |
Retrocopy | APMKKLVAKGGQK<NKQILKFTLDCTYPVEDGIMNSTNFEQFLQERIKMNGKAGNLGRGIVTIRRSKSKI |
Parental | TVTSEVPFSKRYLKYLTKKYLKK |
T.TSEV.FSKRYLKYLT.KYLKK | |
Retrocopy | TETSEVTFSKRYLKYLTRKYLKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |