RetrogeneDB ID: | retro_itri_1543 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393536.1:1281882..1282165(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSSTOG00000002832 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 74.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | KKLVAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAG-NLGGGVVT-IERSKSKITV |
KKLV.KG.K.KKQV.KFTLDCTH..ED.IMDAANFE.FLQERI....K.G.NLG.GVVT.I.RSKS.I.. | |
Retrocopy | KKLVVKGVKNKKQVPKFTLDCTHLAEDEIMDAANFEWFLQERIQGSKKPG<NLGEGVVT>IQRSKSEIAE |
Parental | T-SEVPFSKRYLKYLTKKYLKKNNLRDW |
T.S.V.FS..YLKY.TKKYL.KNNL.DW | |
Retrocopy | T>SKVSFSTKYLKYFTKKYL-KNNLHDW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |