RetrogeneDB ID: | retro_itri_1386 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393470.1:316386..316657(-) | ||
Located in intron of: | ENSSTOG00000025143 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OSTC | ||
Ensembl ID: | ENSSTOG00000021644 | ||
Aliases: | None | ||
Description: | oligosaccharyltransferase complex subunit (non-catalytic) [Source:HGNC Symbol;Acc:24448] |
Percent Identity: | 72.04 % |
Parental protein coverage: | 61.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VPFLVLECPNLKLKKP-PWVHMPSAMTVYALVVVSYFLITGGIIYDVIVEPPSVGSMTDEHGHQRPVAFL |
VPFLVLECPNLKLK.P.P..H...........VVS.FLITGGII.D.IV....VGSMTDEHGH.RPVAFL | |
Retrocopy | VPFLVLECPNLKLKLP>PCAHAVGRPWRVCWGVVSCFLITGGIIHDIIVGS-NVGSMTDEHGHRRPVAFL |
Parental | AYRVNGQYIMEGLASSFLFTMGG |
AYRV.GQYIMEGLA..FLFTMGG | |
Retrocopy | AYRV-GQYIMEGLALGFLFTMGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001753 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000011286 | 12 retrocopies | |
Callithrix jacchus | ENSCJAG00000016002 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000024467 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000003717 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000026873 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000020599 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008869 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041084 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012929 | 11 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011056 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000033684 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005915 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000023322 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009145 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021644 | 6 retrocopies | |
Tarsius syrichta | ENSTSYG00000000724 | 2 retrocopies |