RetrogeneDB ID: | retro_itri_15 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393378.1:3722725..3723085(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000028374 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OSTC | ||
Ensembl ID: | ENSSTOG00000021644 | ||
Aliases: | None | ||
Description: | oligosaccharyltransferase complex subunit (non-catalytic) [Source:HGNC Symbol;Acc:24448] |
Percent Identity: | 88.98 % |
Parental protein coverage: | 79.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TVYALVVVSYFLITGGIIYDVIVEPPSVGSMTDEHGHQRPVAFLAYRVNGQYIMEGLASSFLFTMGGLGF |
TVY.LVVVSYFLI..GIIYDVIVEPPS.GSMTD.HGHQRPVAFLAYRVNGQYIMEGLASSFLF.MGGLGF | |
Retrocopy | TVYTLVVVSYFLISRGIIYDVIVEPPSFGSMTDDHGHQRPVAFLAYRVNGQYIMEGLASSFLFIMGGLGF |
Parental | IILDRSNAPNIPKLNRFLLLFIGFVCVLLSFFMARVFMRMKLPGYLMG |
IILDRS.APNIP.LNRFLLLFIGF.C.L.SF.MAR.FMRMKLPGYLMG | |
Retrocopy | IILDRSIAPNIPELNRFLLLFIGFICALQSFVMARIFMRMKLPGYLMG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001753 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000011286 | 12 retrocopies | |
Callithrix jacchus | ENSCJAG00000016002 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000024467 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000003717 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000026873 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000020599 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008869 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041084 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012929 | 11 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011056 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000033684 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005915 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000023322 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009145 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021644 | 6 retrocopies | |
Tarsius syrichta | ENSTSYG00000000724 | 2 retrocopies |