RetrogeneDB ID: | retro_itri_167 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393430.1:1940789..1941191(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000023496 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS24 | ||
Ensembl ID: | ENSSTOG00000013000 | ||
Aliases: | None | ||
Description: | ribosomal protein S24 [Source:HGNC Symbol;Acc:10411] |
Percent Identity: | 95.45 % |
Parental protein coverage: | 92.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | NDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTG |
NDTVTIRTRKFMTNRLLQRKQ.VIDVLHPGKATVPKT.IREKLAKMYKTTPDVIFVFGFRTHFGGGKTTG | |
Retrocopy | NDTVTIRTRKFMTNRLLQRKQIVIDVLHPGKATVPKTDIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTG |
Parental | FGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKMRE |
FGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQ.K.RKNRMKKVRGTAKANVGAGKK..E | |
Retrocopy | FGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQQKKRKNRMKKVRGTAKANVGAGKKPKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013264 | 9 retrocopies | |
Dipodomys ordii | ENSDORG00000000189 | 4 retrocopies | |
Felis catus | ENSFCAG00000000849 | 3 retrocopies | |
Homo sapiens | ENSG00000138326 | 3 retrocopies | |
Gadus morhua | ENSGMOG00000012595 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000027878 | 10 retrocopies | |
Myotis lucifugus | ENSMLUG00000024102 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000003778 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025290 | 13 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000012472 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011005 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000002666 | 10 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000013000 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000006715 | 1 retrocopy |