RetrogeneDB ID:

retro_ogar_1000

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873533.1:10922619..10922992(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000011005
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_1000
ACTATCCCGGCCAGGAAGTTCATGACCAACCAACTACTTCAGAGAAAACAAGTGGTCATCGATGTCCTTCCACCTAGGAT
GGCAACAGTACCAAAGACAGGATTTAGGGAAGAACTAGCTAAAAGGTACAAAACCACACCTGATACCATCTTTGGATTTG
AATTCAGAATTCACTGTGGTGGAGGCAAGACAGCTAGCTGGCTTTGGCAGGATTTACAATTCTGCCTATCATGCAAAGAA
AAATGAACCCAAACATAGACTTACAAGGTATGGCCTGTATGAGAAGAAAAAGTCCTCAAGAAAGCAGCAAAAGGAACCCA
AGAACAGAACGAAGAAAGGCGGGGTGACTGCAAAGGCCAATGCCAGTGCTGGA

ORF - retro_ogar_1000 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.6 %
Parental protein coverage: 95.35 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHF-GGGKTT-GFG
TI..RKFMTN.LLQRKQ.VIDVL.P..ATVPKT..RE.LAK.YKTTPD.IF.F.FR.H..GG.....GFG
RetrocopyTIPARKFMTNQLLQRKQVVIDVLPPRMATVPKTGFREELAKRYKTTPDTIFGFEFRIHCGGGKTAS>GFG
ParentalMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAG
.IY.S...AKKNEPKHRL.R.GLYEKKK.SRKQ.KE.KNR.KK...TAKAN..AG
RetrocopyRIYNSAYHAKKNEPKHRLTRYGLYEKKKSSRKQQKEPKNRTKKGGVTAKANASAG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1000 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 64 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000132649 retrocopies
Dipodomys ordii ENSDORG000000001894 retrocopies
Felis catus ENSFCAG000000008493 retrocopies
Homo sapiens ENSG000001383263 retrocopies
Gadus morhua ENSGMOG000000125951 retrocopy
Loxodonta africana ENSLAFG0000002787810 retrocopies
Myotis lucifugus ENSMLUG000000241021 retrocopy
Mustela putorius furoENSMPUG000000037781 retrocopy
Mus musculus ENSMUSG0000002529013 retrocopies
Oryctolagus cuniculus ENSOCUG000000124721 retrocopy
Otolemur garnettii ENSOGAG00000011005 3 retrocopies
retro_ogar_1000 , retro_ogar_2, retro_ogar_2130,
Pan troglodytes ENSPTRG0000000266610 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000130004 retrocopies
Tarsius syrichta ENSTSYG000000067151 retrocopy



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