RetrogeneDB ID: | retro_btau_1311 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 4:18941194..18941583(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS24 | ||
Ensembl ID: | ENSBTAG00000013264 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S24 [Source:UniProtKB/Swiss-Prot;Acc:Q56JU9] |
Percent Identity: | 88.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAK-MYKTTPDVIFVFGFRTHFGGGKT |
..DTVTI.TRKFMTN.LLQRKQMVIDVLHPGKATV.KTEIREKLAK.MYKTTPDVIFVFGFRTHFGGGKT | |
Retrocopy | VKDTVTIQTRKFMTN*LLQRKQMVIDVLHPGKATVRKTEIREKLAK<MYKTTPDVIFVFGFRTHFGGGKT |
Parental | TGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKK |
.GFGMIY.SLDYAKKNE.KHRLAR.GLYEKKKTSRKQ.K..KNRM.KVRG.AKANVGAGKK | |
Retrocopy | IGFGMIYHSLDYAKKNERKHRLARRGLYEKKKTSRKQ*KKCKNRMQKVRGNAKANVGAGKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 437 .33 RPM |
ERP005899_muscle | 0 .42 RPM | 1212 .35 RPM |
SRP017611_brain | 0 .00 RPM | 187 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 336 .31 RPM |
SRP017611_liver | 0 .08 RPM | 240 .49 RPM |
SRP030211_testis | 0 .02 RPM | 173 .01 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013264 | 9 retrocopies |
retro_btau_1137, retro_btau_1311 , retro_btau_1562, retro_btau_285, retro_btau_467, retro_btau_577, retro_btau_586, retro_btau_788, retro_btau_980,
|
Felis catus | ENSFCAG00000000849 | 3 retrocopies | |
Homo sapiens | ENSG00000138326 | 3 retrocopies | |
Gadus morhua | ENSGMOG00000012595 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000027878 | 10 retrocopies | |
Myotis lucifugus | ENSMLUG00000024102 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000003778 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000012472 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011005 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000002666 | 10 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000013000 | 4 retrocopies |