RetrogeneDB ID: | retro_itri_331 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393284.1:10738046..10738996(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSSTOG00000011327 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 92.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE |
MPREDRATWKSNYFLKIIQLLDD.PKCF.VG.DNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE | |
Retrocopy | MPREDRATWKSNYFLKIIQLLDDSPKCFTVGTDNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE |
Parental | NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIA-PCEVTVPAQNTGLGPEKTSFFQ |
NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIA..CEVTVPAQNTGLGPEKTSFFQ | |
Retrocopy | NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIA<TCEVTVPAQNTGLGPEKTSFFQ |
Parental | ALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEE |
ALGITTKISRGTIEILSDVQLI.TGDKVGASEATLLNMLNISPFS.GLIIQQVFDNGSIYNPEVLDITEE | |
Retrocopy | ALGITTKISRGTIEILSDVQLIETGDKVGASEATLLNMLNISPFSLGLIIQQVFDNGSIYNPEVLDITEE |
Parental | TLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEYTFPLAEKVKAFLADPSAFVAAA |
TLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGY.RVLALSVETEYTFPLAEKVKAFLADPSAFV... | |
Retrocopy | TLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGY*RVLALSVETEYTFPLAEKVKAFLADPSAFVXXX |
Parental | PVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD |
..............APAKVEAKEESEESDEDMGFGLFD | |
Retrocopy | XXXXXXXXXXXXXXAPAKVEAKEESEESDEDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |