RetrogeneDB ID: | retro_tsyr_75 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_1764:26453..27029(+) | ||
Located in intron of: | ENSTSYG00000005353 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSTSYG00000009732 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 86.46 % |
Parental protein coverage: | 64.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGF |
QLLDDYPKCFIVGA.N..SK.MQQIRMSL.GKAVVLM.KN.MM.K.I.GHLENNP.LEKLLPHIR..VGF | |
Retrocopy | QLLDDYPKCFIVGAHNMFSKKMQQIRMSLQGKAVVLMSKNIMMHKVI*GHLENNPTLEKLLPHIRRKVGF |
Parental | VFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDV |
VFTKEDLTEI.DMLLANKV.AAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALG.TT.ISRG.IEILS.V | |
Retrocopy | VFTKEDLTEIQDMLLANKVSAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGMTTEISRGAIEILSYV |
Parental | QLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEDT |
QLIKTGDK.GASEATLLNMLNISPFSFGLIIQQVF...SIY..EVLDITE.T | |
Retrocopy | QLIKTGDKEGASEATLLNMLNISPFSFGLIIQQVFNDSSIYSSEVLDITEET |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |